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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttccagtacaatgtctcaggctttgagtttacactaattattgttttttgtttctcttacttctgctaaactttgactagtttttatttccacccctccttttctgcagTGGTCAAGCTGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGTCATGTCCGACATAAAAACTTGGTTCGACTTTTGGGGTACTGCATTGAGGGGACT

Basic information

species Glycine max
transcript GLYMA20G22550.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G22550.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0060g00460.t01 (Vitis vinifera), 3'ss of exon 2
gtgagttccagtacaatgtctcaggctttgagtttacactaattattgttttttgtttctcttacttctgctaaactttgactagtttttatttccacccctccttttctgcagTGGTCAAGCTGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGTCATGTCCGACATAAAAACTTGGTTCGACTTTTGGGGTACTGCATTGAGGGGACT
|||||||  |  |||  |   |  | | ||  |      |  ||||  ||| || ||| |    | |||| | |  | |  ||||  ||||  | |    ||  |||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| || || || || |||||||| ||| | || || |||||||| ||||| 
gtgagtttaa--acatcgctcc--gttgtgtttccgactttgttatgatttcttatttatt---cctctggtgagttctt-ctagagtttaacttctaaacttattttcttcagGGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGTGCGCCACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttacttctgctaaactttgactagtttttatttccacccctccttttctgcagTGGTCAAGCTGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGTCATGTCCGACATAAAAACTTGGTTCGACTTTTGGGGTACTGCATTGAGGGGACT
                      ctagtttttatttcca  CT-rich tract
                     actagtttttattt  TA-rich tract