1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atggttttttgttttttaattgttattattattatttggagaatgaggtgttggtaaattattggaagaaatgaatttgatgtgggaaatgctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTTCACTTGTTCAAGACTGGGATTGAGCCTAAATGGGAAGATCCTGAGTGT
species | Glycine max |
transcript | GLYMA20G21510.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTEST: gi|298192521|gb|HO036603.1|HO036603
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTEST: gi|192325421|gb|FK018377.1|FK018377
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTEST: gi|14999254|gb|BI320281.1|BI320281
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTEST: gi|209724913|gb|BW669602.1|BW669602
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTEST: gi|254320358|gb|GR831166.1|GR831166
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTEST: gi|13791212|gb|BG653803.1|BG653803
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTEST: gi|298197400|gb|HO044879.1|HO044879
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTEST: gi|298176097|gb|HO015502.1|HO015502
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTEST: gi|298177677|gb|HO023696.1|HO023696
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTEST: gi|120532041|gb|EH260174.1|EH260174
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTEST: gi|209700394|gb|BW664407.1|BW664407
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTEST: gi|192310624|gb|FG999591.1|FG999591
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTEST: gi|7685617|gb|AW756265.1|AW756265
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTEST: gi|120533215|gb|EH261348.1|EH261348
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTEST: gi|298177406|gb|HO027187.1|HO027187
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAATAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCTCAGCAAGTGGCAAATCAACGCGGATTTEST: gi|23733803|gb|BU765115.1|BU765115
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
EST: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTG TTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
genomic: ACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTCTGGTGgtataaattt ... gctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTT
aggtgttggtaaattattggaagaaatgaatttgatgtgggaaatgctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTTCACTTGTTCAAGACTGGGATTGAGCCTAAATGGGAAGATCCTGAGTGT
atttgat putative branch site (score: 5)
taaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggttttttgttttttaattgttattattattatttggagaatgaggtgttggtaaattattggaagaaatgaatttgatgtgggaaatgctggtatagTTTGTATGATCAGGTATTCAAGCCCAGCAAGTTGCAAATCAATGCGGATTTTCACTTGTTCAAGACTGGGATTGAGCCTAAATGGGAAGATCCTGAGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - gaatgag
- - - - - - - - - - - - - - - - - - - - - - - -gtgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgtgg