1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agctgagcgatttcaatgctcacattgagtgtagaaggtcacacaatgtgattaattgtgccttattttttaatttattctggtcttcctgtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG
species | Glycine max |
transcript | GLYMA20G21250.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|58022880|gb|CX709621.1|CX709621
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: GCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|10234556|gb|BE803444.1|BE803444
genomic: GCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|207759847|gb|GD732288.1|GD732288
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCCTAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|12689942|gb|BG156278.1|BG156278
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|58020838|gb|CX707580.1|CX707580
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: CAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|14990237|gb|BI315910.1|BI315910
genomic: CAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|208294662|gb|GE094383.1|GE094383
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCGTTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|7588010|gb|AW703815.1|AW703815
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: GCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|151400274|gb|EV270088.1|EV270088
genomic: GCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|17964468|gb|BM271203.1|BM271203
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|5677258|gb|AI938388.1|AI938388
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTGGCATATTATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|31464033|gb|CD406061.1|CD406061
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACGATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACTATTTGACTGGGAAGCCCEST: gi|192308445|gb|FK002817.1|FK002817
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|31312516|gb|CD397719.1|CD397719
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|21600407|gb|BQ610738.1|BQ610738
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|254325850|gb|GR838731.1|GR838731
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|192327100|gb|FK015492.1|FK015492
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|207830383|gb|GD802397.1|GD802397
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|18692955|gb|BM521803.1|BM521803
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|254324568|gb|GR833993.1|GR833993
genomic: AGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|31469700|gb|CD411728.1|CD411728
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACNATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|208150579|gb|GD945108.1|GD945108
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: CTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|192310362|gb|FK002242.1|FK002242
genomic: CTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGTCCEST: gi|192323685|gb|FK015991.1|FK015991
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|151399653|gb|EV269524.1|EV269524
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|18848468|gb|BM567685.1|BM567685
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AGCATTCTACAATGGCC ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCEST: gi|192324854|gb|FK016070.1|FK016070
genomic: AGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC ACTATTCCGGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
atgtgattaattgtgccttattttttaatttattctggtcttcctgtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG
ttttaat putative branch site (score: 3)
tcttcctgtttttgc putative PPT
attaattgtgccttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctgagcgatttcaatgctcacattgagtgtagaaggtcacacaatgtgattaattgtgccttattttttaatttattctggtcttcctgtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG
- - - - - - - - - ctcacat
- - - - - - - - - - - - -tgagtgt
- - - - - - - - - - - - - - - - - - - -cacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attctgg