Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtgtttttatcgcttttcatgattttagttgtatctgattttgtaaatgaaaaatagttaggaagggaggaaggatgtcattaatcatagaattagtactttctagttactctgatgttgtgaactcttccaattttcaaatatgctgatcttaattaatttttctgctctttataaattgtagTGTTGATGAGTTGCAGAAGTTTTTATCTGACAAAGATGCGTATCAACAATTTTTGCATTCGCTTGATCAGGTCAACATTCAAACTAAT

Basic information

species Glycine max
transcript GLYMA20G19470.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G19470.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G53120.1 (Arabidopsis thaliana), 3'ss of exon 2
gtctgtgtttttatcgcttttcatgattttagttgtatctgattttgtaaatgaaaaatagttaggaagggaggaaggatgtcattaatcatagaattagtactttctagttactctgatgttgtgaactcttccaattttcaaatatgctgatcttaattaatttttctgctctttataaat-tgtagTGTTGATGAGTTGCAGAAGTTTTTATCTGACAAAGATGCGTATCAACAATTTTTGCATTCGCTTGATCAGGTCAACATTCAAACTAAT
                                                                                                || |  |||| |  ||  |    |||| |       || | | | |   | |  ||    |  |   |||   |  | | ||    | ||||| || |||||  |   |||| || | |||||||||||||||||||| |||||| |||  || ||||| ||||||||  | || | ||||
-----------------------------------------------------------------------------------------------gtttgctctttttgtttgtttgtttgttatccttctctcgagtgtgcgttttttttgtatgtcttctttttgaatagtgtatacttttctgtagCGTGGATGAACTCAGGAAGCTTCTCTCTGACAAAGATGCGTATCAGCAATTTCTGCTCTCTCTTGACCAGGTCAAAGTCCAGAATAAT

upper sequence: GLYMA20G19470.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G36680.1 (Arabidopsis thaliana), 3'ss of exon 2
gtctgtgtttttatcgcttttcatgattttagttgtatctgattttgtaaatgaaaaatagttaggaagggaggaaggatgtcattaatcatagaattagtactttctagttactctgatgttgtgaactcttccaattttcaaatatgctgatcttaattaatttttctgctctttataaattgtagTGTTGATGAGTTGCAGAAGTTTTTATCTGACAAAGATGCGTATCAACAATTTTTGCATTCGCTTGATCAGGTCAACATTCAAACTAAT
                                                            | ||   |  | | |  ||| ||  || |  | |   |  ||  || ||             ||   ||||||  | |  |||  |||| || |||   | || | || |||||||          ||||| |||||| |   |||| || | |||||||| |||||||||||||| ||| |||| |||||||| |||||||  |||||||  |||
------------------------------------------------------------gatatataaagggaattgatttctgtacttgtcggtatgttatcttgta-------------tgcttactctt--attactcatttatgatgttct---tcaaatgttttgctctt----------agTGTGGATGAGCTTAGGAAGCTTCTCTCTGACAAGGATGCGTATCAACAGTTTCTGCACTCGCTTGACCAGGTCACTATTCAAAACAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaattttcaaatatgctgatcttaattaatttttctgctctttataaattgtagTGTTGATGAGTTGCAGAAGTTTTTATCTGACAAAGATGCGTATCAACAATTTTTGCATTCGCTTGATCAGGTCAACATTCAAACTAAT
                        aattaat  putative branch site (score: 3)
                              tttttctgctctttat  CT-rich tract
                      ttaattaatttttctg  TA-rich tract