1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaagctgccttatgattgacatgtatcttttgaagctgctcaagttatggaatgtgctttatgattgacagtgttatccttttccatgacttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
species | Glycine max |
transcript | GLYMA20G18440.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTEST: gi|192326367|gb|FK017669.1|FK017669
genomic: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
EST: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTEST: gi|19054300|gb|BM732967.1|BM732967
genomic: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
EST: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTEST: gi|193689798|gb|FK632317.1|FK632317
genomic: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
EST: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTEST: gi|7588075|gb|AW703878.1|AW703878
genomic: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
EST: TTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTEST: gi|192305354|gb|FG994036.1|FG994036
genomic: TTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
EST: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTEST: gi|23728179|gb|BU762135.1|BU762135
genomic: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
EST: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTEST: gi|298192581|gb|HO033015.1|HO033015
genomic: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
EST: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTTEST: gi|151394202|gb|EV264073.1|EV264073
genomic: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
EST: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
genomic: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
tatggaatgtgctttatgattgacagtgttatccttttccatgacttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
gattgac putative branch site (score: 3)
tttatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagctgccttatgattgacatgtatcttttgaagctgctcaagttatggaatgtgctttatgattgacagtgttatccttttccatgacttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
-aagctgc
- - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - -gaatgtg