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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtccctcgttcatttccttcaatcaatccctcattcgttttcttcattcacgaaaccctttctcagttaaatttgaaacgcagGTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAGAAGCCCGCTGTGCGAAGCCTTGCGGCGCCGTTTCGAATGAACGAGGGAA

Basic information

species Glycine max
transcript GLYMA20G16170.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213617333|gb|DB965204.1|DB965204
EST:     AGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCC                         GTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAG
genomic: AGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCCgtgagtccct ... tgaaacgcagGTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAG
EST: gi|213598692|gb|DB958192.1|DB958192
EST:     AGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCC                         GTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAG
genomic: AGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCCgtgagtccct ... tgaaacgcagGTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAG
EST: gi|209701446|gb|BW655827.1|BW655827
EST:     AGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCC                         GTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAG
genomic: AGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCCgtgagtccct ... tgaaacgcagGTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAG
EST: gi|213603604|gb|DB966774.1|DB966774
EST:     AGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCC                         GTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAG
genomic: AGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCCgtgagtccct ... tgaaacgcagGTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAG
EST: gi|23725561|gb|BU760739.1|BU760739
EST:     AGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCC                         GTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAG
genomic: AGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCCgtgagtccct ... tgaaacgcagGTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAG
EST: gi|9987507|gb|BE661615.1|BE661615
EST:     AGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCC                         GTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAG
genomic: AGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCCgtgagtccct ... tgaaacgcagGTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAG
EST: gi|213589815|gb|DB959426.1|DB959426
EST:     AGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCC                         GTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAG
genomic: AGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCCgtgagtccct ... tgaaacgcagGTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAG
EST: gi|209716195|gb|BW668695.1|BW668695
EST:     AGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCC                         GTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAG
genomic: AGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCCgtgagtccct ... tgaaacgcagGTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctcattcgttttcttcattcacgaaaccctttctcagttaaatttgaaacgcagGTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAGAAGCCCGCTGTGCGAAGCCTTGCGGCGCCGTTTCGAATGAACGAGGGAA
                                    agttaaatttgaaa  TA-rich tract