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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtcccctctccttttttttttcttcttgttttgctctctttatcaaatcttatttttcctttaatctaattcgcggttctctatattttcaataacaataagttgaatcctttgaggaattgatatgtcaagaaattcttcctttctaattctaaattgattttgctgacagatgtttcttgtgctttgtagGTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCCCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGA

Basic information

species Glycine max
transcript GLYMA20G16100.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G16100.3 (Glycine max), 3'ss of exon 1
lower sequence: AT5G42050.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgtgtcccctctccttttttttttcttcttgttttgctctctttatcaaatcttatttttcctttaatctaattcgcggttctctatattttcaataacaataagttgaatcctttgaggaattgatatgtcaagaaattcttcctttctaattctaaattgattttgctgacagatgtttcttgtgctttgtagGTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCCCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGA
                                                                                                ||   || |     ||| ||      | || |  |       ||| || |||  |  || | | |||    ||  ||  ||  ||  ||         |||  |||| ||| ||||||| || || || ||| | |||||||||||  | ||  | ||||| ||||||||||||||||||||||| ||||| ||||  ||
-----------------------------------------------------------------------------------------------gtattcatca-ccacatctttcttcttactgtttcg-------attgtttcttcttggttttgatttg----tggggatggaaattgttt---------agGATTGCCACCAAGATACAGGGACTCGGTTAGAGCGATAACTCCAGGACTTCCTCTGTTTCTTTACAACTACTCCACTCACCAACTTCATGGAATCTACGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcctttctaattctaaattgattttgctgacagatgtttcttgtgctttgtagGTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCCCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGA
                          tgctgac  putative branch site (score: 2)
                                      tttcttgt  putative PPT
     tttctaattctaaatt  TA-rich tract