1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggatttttatcattttgttaccatcttcttctgaataactagcataatgggaggggtttttgttcttgagaataaatacaggttctgtatttcgtggtagGGTGCTTGGATCCTGAGAACTTCAAAGAATTTAAACTTGTTAAACGCACTCAACTCAGCCATAATGTTGCCACGTTCCGATTTGATCTTCCTACTCCTAA
species | Glycine max |
transcript | GLYMA20G05640.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATTGTTGGTGGCACCGCTTACTATTACTACGTCACCAAGAAGCCAAAAG GGTGCTTGGATCCTGAGAACTTCAAAGAATTTAAACTTGTTAAACGCACTCEST: gi|207701935|gb|GD683487.1|GD683487
genomic: CATTGTTGGTGGCACCGCTTACTATTACTACGTCACCAAGAAGCCAAAAGgttttgcttt ... ttcgtggtagGGTGCTTGGATCCTGAGAACTTCAAAGAATTTAAACTTGTTAAACGCACTC
EST: CATTGTTGGTGGCACCGCTTACTATTACTACGTCACCAAGAAGCCAAAAG GGTGCTTGGATCCTGAGAACTTCAAAGAATTTAAACTTGTTAAACGEST: gi|151395866|gb|EV265743.1|EV265743
genomic: CATTGTTGGTGGCACCGCTTACTATTACTACGTCACCAAGAAGCCAAAAGgttttgcttt ... ttcgtggtagGGTGCTTGGATCCTGAGAACTTCAAAGAATTTAAACTTGTTAAACG
EST: CATTGTTGGTGGCACCGCTTACTATTACTACGTCACCAAGAAGCCAAAAG GGTGCTTGGATCCTGAGAACTTCAAAGAATTTAAACTTGTTAAACGCACTCEST: gi|254343624|gb|GR857380.1|GR857380
genomic: CATTGTTGGTGGCACCGCTTACTATTACTACGTCACCAAGAAGCCAAAAGgttttgcttt ... ttcgtggtagGGTGCTTGGATCCTGAGAACTTCAAAGAATTTAAACTTGTTAAACGCACTC
EST: CATTGTTGGTGGCACCGCTTACTATTACTACGTCACCAAGAAGCCAAAAG GGTGCTTGGATCCTGAGAACTTCAAAGAATTTAAACTTGTTAAACGCACTCEST: gi|151412854|gb|EV282666.1|EV282666
genomic: CATTGTTGGTGGCACCGCTTACTATTACTACGTCACCAAGAAGCCAAAAGgttttgcttt ... ttcgtggtagGGTGCTTGGATCCTGAGAACTTCAAAGAATTTAAACTTGTTAAACGCACTC
EST: CATTGTTGGTGGCACCGCTTACTATTACTACGTCACCAAGAAGCCAAAAG GGTGCTTGGATCCTGAGAACTTCAAAGAATTTAAACTTGTTAAACGCACTC
genomic: CATTGTTGGTGGCACCGCTTACTATTACTACGTCACCAAGAAGCCAAAAGgttttgcttt ... ttcgtggtagGGTGCTTGGATCCTGAGAACTTCAAAGAATTTAAACTTGTTAAACGCACTC
aatgggaggggtttttgttcttgagaataaatacaggttctgtatttcgtggtagGGTGCTTGGATCCTGAGAACTTCAAAGAATTTAAACTTGTTAAACGCACTCAACTCAGCCATAATGTTGCCACGTTCCGATTTGATCTTCCTACTCCTAA
agaataaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatttttatcattttgttaccatcttcttctgaataactagcataatgggaggggtttttgttcttgagaataaatacaggttctgtatttcgtggtagGGTGCTTGGATCCTGAGAACTTCAAAGAATTTAAACTTGTTAAACGCACTCAACTCAGCCATAATGTTGCCACGTTCCGATTTGATCTTCCTACTCCTAA
- - - - - - - -tgttacc
- - - - - - - - - - - - - tcttctg
- - - - - - - - - - - - - - - - - - - - - - - - gggaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttctg