1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaatcacagccaaggttttttgtcaagataacactataactttgaagtgttttcttttcttattctcttcacaatatgaattataaagcatgtaatgtagGGCCAATTTGGAATAACACACCAGCAGATGCTAGCACAGATCTCATCTCAAGCTGTGCAAACCCACTCTGAACATCCATTCTCTATATCAGCCGTATCTG
species | Glycine max |
transcript | GLYMA20G03410.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCACCACAACGTTCGCGCTTCCACCTGGATTCATCGATTCACCTTCTCAA GGCCAATTTGGAATAACACACCAGCAGATGCTAGCACAGATCTCATCTCAAEST: gi|213587338|gb|DB959591.1|DB959591
genomic: CCACCACAACGTTCGCGCTTCCACCTGGATTCATCGATTCACCTTCTCAAgtaataacac ... tgtaatgtagGGCCAATTTGGAATAACACACCAGCAGATGCTAGCACAGATCTCATCTCAA
EST: CCACCACAACGTTCGCGCTTCCACCTGGATTCATCGATTCACCTTCTCAA GGCCAATTTGGAATAACACACCAGCAGATGCTAGCACAGATCTCATCTCAA
genomic: CCACCACAACGTTCGCGCTTCCACCTGGATTCATCGATTCACCTTCTCAAgtaataacac ... tgtaatgtagGGCCAATTTGGAATAACACACCAGCAGATGCTAGCACAGATCTCATCTCAA
agtgttttcttttcttattctcttcacaatatgaattataaagcatgtaatgtagGGCCAATTTGGAATAACACACCAGCAGATGCTAGCACAGATCTCATCTCAAGCTGTGCAAACCCACTCTGAACATCCATTCTCTATATCAGCCGTATCTG
acaatatgaattataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatcacagccaaggttttttgtcaagataacactataactttgaagtgttttcttttcttattctcttcacaatatgaattataaagcatgtaatgtagGGCCAATTTGGAATAACACACCAGCAGATGCTAGCACAGATCTCATCTCAAGCTGTGCAAACCCACTCTGAACATCCATTCTCTATATCAGCCGTATCTG
- - cacagcc
- - - - - - - - - - tgtcaag