1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gctgtggggtagagttatttgaagtttggaaggaattgtgttgtgtgcatatggttttccctgcgtgatattgagctcaactgtgctttcttcttaacagATAGATGAAAATGTACGAAGGGAAATTATAAATCACAGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAG
species | Glycine max |
transcript | GLYMA20G01240.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCACACTGAGGAGCTTGTTGCTGTCAAGTATATTGAGAGAGGTGATAAG ATAGATGAAAATGTACGAAGGGAAATTATAAATCACAGATCACTGAGGCATEST: gi|18041406|gb|BM309700.1|BM309700
genomic: AGCACACTGAGGAGCTTGTTGCTGTCAAGTATATTGAGAGAGGTGATAAGgtttgttaat ... ttcttaacagATAGATGAAAATGTACGAAGGGAAATTATAAATCACAGATCACTGAGGCAT
EST: AGCACACTGAGGAGCTTGTTGCTGTCAAGTATATTGAGAGAGGTGATAAG ATAGATGAAAATGTACGAAGGGAAATTATAAATCACAGATCACTGAGGCAT
genomic: AGCACACTGAGGAGCTTGTTGCTGTCAAGTATATTGAGAGAGGTGATAAGgtttgttaat ... ttcttaacagATAGATGAAAATGTACGAAGGGAAATTATAAATCACAGATCACTGAGGCAT
tgcatatggttttccctgcgtgatattgagctcaactgtgctttcttcttaacagATAGATGAAAATGTACGAAGGGAAATTATAAATCACAGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAG
ctgtgctttcttctt CT-rich tract
tgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgtggggtagagttatttgaagtttggaaggaattgtgttgtgtgcatatggttttccctgcgtgatattgagctcaactgtgctttcttcttaacagATAGATGAAAATGTACGAAGGGAAATTATAAATCACAGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - -ggggtag
- - - - - - - - - - - - - tggaagg
- - - - - - - - - - - - - - - - - - - tgttgtg
- - - - - - - - - - - - - - - - - - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctttc