1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...atatcatagtgacgtgtcaaatgactatttatgtcataattttgtaataaaacagaaagtacacgtcacttatcagaagttttaatgcttcgtttggcagGGACTCTGTTAAGAGGAACCCCAACAACAATATGTTGGGTAGGCGTCAAAAAACCGAATCTAAG
species | Glycine max |
transcript | GLYMA20G01060.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTCTCTTGGAGGTTCCTTCTGATTTTAAGTCCCCTTGGGATTTCTTCAG GGACTCTGTTAAGAGGAACCCCAACAACAATATGTTGGGTAGGCGTCAAAAEST: gi|192317443|gb|FK011261.1|FK011261
genomic: GGTCTCTTGGAGGTTCCTTCTGATTTTAAGTCCCCTTGGGATTTCTTCAGgttagtattt ... cgtttggcagGGACTCTGTTAAGAGGAACCCCAACAACAATATGTTGGGTAGGCGTCAAAA
EST: GGTCTCTTGGAGGTTCCTTCTGATTTTAAGTCCCCTTGGGATTTCTTCAG GGACTCTGTTAAGAGGAACCCCAACAACAATATGTTGGGTAGGCGTCAAAAEST: gi|192317444|gb|FK011262.1|FK011262
genomic: GGTCTCTTGGAGGTTCCTTCTGATTTTAAGTCCCCTTGGGATTTCTTCAGgttagtattt ... cgtttggcagGGACTCTGTTAAGAGGAACCCCAACAACAATATGTTGGGTAGGCGTCAAAA
EST: TCTCTTGGAGGTTCCTTCTGATTTTAAGTCCCCTTGGGATTTCTTCAG GGACTCTGTTAAGAGGAACCCCAACAACAATATGTTGGGTAGGCGTCAAAA
genomic: TCTCTTGGAGGTTCCTTCTGATTTTAAGTCCCCTTGGGATTTCTTCAGgttagtattt ... cgtttggcagGGACTCTGTTAAGAGGAACCCCAACAACAATATGTTGGGTAGGCGTCAAAA
aataaaacagaaagtacacgtcacttatcagaagttttaatgcttcgtttggcagGGACTCTGTTAAGAGGAACCCCAACAACAATATGTTGGGTAGGCGTCAAAAAACCGAATCTAAG
ttttaat putative branch site (score: 3)
cttcgttt CT-rich tract
aagttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatcatagtgacgtgtcaaatgactatttatgtcataattttgtaataaaacagaaagtacacgtcacttatcagaagttttaatgcttcgtttggcagGGACTCTGTTAAGAGGAACCCCAACAACAATATGTTGGGTAGGCGTCAAAAAACCGAATCTAAG
- - - - -tgacgtg
- - - - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttaatgc