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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatccatctaaccaatattatttgtttaaattgagattatgctccattcccagtcactttagtctctctttttcttgaatgaggcaaatcctgagttcgtcgtgagtcagagctagctaccttcacttcactcactctttcactttgtgtttcagATTCAGCAGCAACTCTGCCCGCATGCGTGCGTGAGGTAAGGTAAG

Basic information

species Glycine max
transcript GLYMA19G44420.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213594451|gb|DB968007.1|DB968007
EST:     AGCGTGGACCAGAACCAAAAGAACAATGTAGAG                         ATTCAGCAGCAACTCTGCCCGCATGCGTGCGTGAGGTAAGGTAAG
genomic: AGCGTGGACCAGAACCAAAAGAACAATGTAGAGgtaaaatcca ... tgtgtttcagATTCAGCAGCAACTCTGCCCGCATGCGTGCGTGAGGTAAGGTAAG
EST: gi|209705624|gb|BW653077.1|BW653077
EST:     AGCGTGGACCAGAACCAAAAGAACAATGTAGAG                         ATTCAGCAGCAACTCTGCCCGCATGCGTGCGTGAGGTAAGGTAAG
genomic: AGCGTGGACCAGAACCAAAAGAACAATGTAGAGgtaaaatcca ... tgtgtttcagATTCAGCAGCAACTCTGCCCGCATGCGTGCGTGAGGTAAGGTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgagtcagagctagctaccttcacttcactcactctttcactttgtgtttcagATTCAGCAGCAACTCTGCCCGCATGCGTGCGTGAGGTAAGGTAAG
                            cactcac  putative branch site (score: 2)
                   ccttcacttcactcac  CT-rich tract