Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagttgggtttgttgacttccaagatccatgtacctgtcaaagtgatttgcttttgctttacaatatcttcttactgttgttcagtgttcttcgtttcagATGAAAACTACTTCAAATCAAGGTTGTTGTACACACATATGTAAAATATCTTGAATTCGAAGTGTGAAGGATTTGCTGAGTTTCCCAAAGACATGTGGTC

Basic information

species Glycine max
transcript GLYMA19G44420.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296878|gb|FG990239.1|FG990239
EST:     TGTGTTTCAGATTCAGCAGCAACTCTGCCCGCATGCGTGCGTGAGGTAAG                         ATGAAAACTACTTCAAATCAAGGTTGTTGTACACACATATGTAAAATATCT
genomic: TGTGTTTCAGATTCAGCAGCAACTCTGCCCGCATGCGTGCGTGAGGTAAGgtaaggtaat ... ttcgtttcagATGAAAACTACTTCAAATCAAGGTTGTTGTACACACATATGTAAAATATCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgcttttgctttacaatatcttcttactgttgttcagtgttcttcgtttcagATGAAAACTACTTCAAATCAAGGTTGTTGTACACACATATGTAAAATATCTTGAATTCGAAGTGTGAAGGATTTGCTGAGTTTCCCAAAGACATGTGGTC
                       ttcttac  putative branch site (score: 2)
                                          ttcttcgtttc  putative PPT
            tttacaatat  TA-rich tract