1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtctggtccttccttaaaaacagtaacttgcatgacggaattgttgtttctagttatattttatgcgtttctgactaattcattcatgtggggtgtgcagCATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCTTGAGAGGGAACCTTACTGGCCCTCTGAAAAGCTCAGAATTTCCATCACT
species | Glycine max |
transcript | GLYMA19G43400.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTTCATTCTTCTCCTAAATCCTAATCCTTCTTCACTTTCAGTTCTCAG CATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCTEST: gi|151396815|gb|EV266688.1|EV266688
genomic: TCCTTCATTCTTCTCCTAAATCCTAATCCTTCTTCACTTTCAGTTCTCAGgtatctcctc ... gggtgtgcagCATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCT
EST: TCCTTCATTCTTCTCCTAAATCCTAATCCTTCTTCACTTTCAGTTCTCAG CATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCTEST: gi|9204307|gb|BE330531.1|BE330531
genomic: TCCTTCATTCTTCTCCTAAATCCTAATCCTTCTTCACTTTCAGTTCTCAGgtatctcctc ... gggtgtgcagCATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCT
EST: TCCTTCATTCTTCTCCTAAATCCTAATCCTTCTTCACTTTCAGTTCTCAG CATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCTEST: gi|192324156|gb|FK017887.1|FK017887
genomic: TCCTTCATTCTTCTCCTAAATCCTAATCCTTCTTCACTTTCAGTTCTCAGgtatctcctc ... gggtgtgcagCATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCT
EST: TCCTTCATTCTTCTCCTAAATCCTAATCCTTCTTCACTTTCAGTTCTCAG CATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCTEST: gi|192308375|gb|FK000899.1|FK000899
genomic: TCCTTCATTCTTCTCCTAAATCCTAATCCTTCTTCACTTTCAGTTCTCAGgtatctcctc ... gggtgtgcagCATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCT
EST: TCCTTCATTCTTCTCCTAAATCCTAATCCTTCTTCACTTTCAGTTCTCAG CATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCT
genomic: TCCTTCATTCTTCTCCTAAATCCTAATCCTTCTTCACTTTCAGTTCTCAGgtatctcctc ... gggtgtgcagCATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCT
gtttctagttatattttatgcgtttctgactaattcattcatgtggggtgtgcagCATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCTTGAGAGGGAACCTTACTGGCCCTCTGAAAAGCTCAGAATTTCCATCACT
gactaat putative branch site (score: 2)
tagttatattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctggtccttccttaaaaacagtaacttgcatgacggaattgttgtttctagttatattttatgcgtttctgactaattcattcatgtggggtgtgcagCATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCTTGAGAGGGAACCTTACTGGCCCTCTGAAAAGCTCAGAATTTCCATCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - -ccttcct
- - - - - - - -aaaaaca
- - - - - - - - - - - - - - -gcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcat