1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgtattttgattttttctaatttactaggattttctataccttgacttgagctagagtggtgagtgattatatgctttatttgatttttggtgaatcagGCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTGTTTACTACTTCCGGAATGCTGTTTTTGGAAGTGAGCTTGCTGGCTTTTT
species | Glycine max |
transcript | GLYMA19G42870.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAG GCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTGEST: gi|298168150|gb|HO013413.1|HO013413
genomic: TTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAGgttcgttttc ... ggtgaatcagGCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTG
EST: TTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAG GCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTGEST: gi|7326844|gb|AW620642.1|AW620642
genomic: TTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAGgttcgttttc ... ggtgaatcagGCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTG
EST: TTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAA GCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTGEST: gi|298177590|gb|HO027257.1|HO027257
genomic: TTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAGgttcgttttc ... ggtgaatcagGCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTG
EST: TTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAG GCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTGEST: gi|298166333|gb|HO008570.1|HO008570
genomic: TTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAGgttcgttttc ... ggtgaatcagGCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTG
EST: TTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAG GCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTGEST: gi|13481686|gb|BG511029.1|BG511029
genomic: TTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAGgttcgttttc ... ggtgaatcagGCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTG
EST: TTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAG GCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTGEST: gi|213598325|gb|DB970181.1|DB970181
genomic: TTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAGgttcgttttc ... ggtgaatcagGCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTG
EST: TTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAG GCATGGGAGTGCACGTCTGGNAGAGAGTTGACATGGAATTTGTTATCCTTGEST: gi|298192527|gb|HO036609.1|HO036609
genomic: TTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAGgttcgttttc ... ggtgaatcagGCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTG
EST: TTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAG GCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTG
genomic: TTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAGgttcgttttc ... ggtgaatcagGCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTG
acttgagctagagtggtgagtgattatatgctttatttgatttttggtgaatcagGCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTGTTTACTACTTCCGGAATGCTGTTTTTGGAAGTGAGCTTGCTGGCTTTTT
attatatgctttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtattttgattttttctaatttactaggattttctataccttgacttgagctagagtggtgagtgattatatgctttatttgatttttggtgaatcagGCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTGTTTACTACTTCCGGAATGCTGTTTTTGGAAGTGAGCTTGCTGGCTTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT