Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttggattgtcgattaggtttagatttgattagttcttgtgtttttgatcagtctgtttggtcttggtttaatttttgttttaaagttttgattttttattgtgttctgattgacctaattttattttgaatcaatcgaatttggtttgttgatgatgtgtgtttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATTGTTCCTAGGCACATTCAGCTTGCTGTGAGGAACGATGAGGAGCTGAGCA

Basic information

species Glycine max
transcript GLYMA19G42760.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42760.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S188_35V6.1 (Physcomitrella patens), 3'ss of exon 1
gtttgttttggattgtcgattaggtttagatttgattagttcttgtgtttttgatcagtctgtttggtcttggtttaatttttgttttaaagttttgattttttattgtgttctgattgacctaattttattttgaatcaatcgaatttggtttgttgatgatgtgtgtttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATTGTTCCTAGGCACATTCAGCTTGCTGTGAGGAACGATGAGGAGCTGAGCA
                                                                              ||  |   |      ||  | | | | |  |  ||||   |     |  ||  ||   |||  | | |    ||    | |   |      || ||  |||||| | ||  ||||||| |||||||| || || ||||||||||||||||| || ||| | ||||| ||||| || ||| | |||||||||||||| || |
------------------------------------------------------------------------------ttcgtccctctccaattgaagtatatttcattctctggaagggtgcaagttggttaagatcgttagtaacgtgtgc-ctaactttagaacattatgcgtagGTTCTTGAGCTGGCTGGAAATGCTGCGAGAGACAACAAGAAGAATCGTATCGTCCCTCGCCACATCCAGCTAGCGGTGCGAAACGATGAGGAGCTAAGTA

upper sequence: GLYMA19G42760.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ17602 (Selaginella moellendorffii), 3'ss of exon 1
gtttgttttggattgtcgattaggtttagatttgattagttcttgtgtttttgatcagtctgtttggtcttggtttaatttttgttttaaagttttgattttttattgtgttctgattgacctaattttattttgaatcaatcgaatttggtttgttgatgatgtgtgtttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATTGTTCCTAGGCACATTCAGCTTGCTGTGAGGAACGATGAGGAGCTGAGCA
                                                                                                           |||   |  ||  |  |  | | ||||   ||     ||| |       |   ||| |       |    ||||  | ||  | ||||| || || ||  ||||||||||||||||||| ||  | || |||||||| ||||| || ||||||||||| |||||||| ||||
-----------------------------------------------------------------------------------------------------------gtgagattctttgctca--tctcttttccgtcgtctcaatctctcaatctcgggatttcgtcccattcccagGTGATCGAGCTCGCTGGAAACGCCGCGCGGGATAACAAGAAGAATCGGATCATCCCCAGGCACATCCAGCTCGCCGTGAGGAACGACGAGGAGCTCAGCA

upper sequence: GLYMA19G42760.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ31506 (Selaginella moellendorffii), 3'ss of exon 1
gtttgttttggattgtcgattaggtttagatttgattagttcttgtgtttttgatcagtctgtttggtcttggtttaatttttgttttaaagtt-ttgattttttattgtgttctgattgacctaattttattttgaatcaatcgaatttggtttgttgatgatgtgtgtttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATTGTTCCTAGGCACATTCAGCTTGCTGTGAGGAACGATGAGGAGCTGAGCA
                                                         || ||| || |||| |     | || | ||||  ||| |||   |||| || ||  | ||||||                |  ||    |||| || || |||| ||         |    ||||  ||||  |||| |||||||||||  | || || ||||||||  | ||  | || || ||||| ||||| |||||||||||||| |||||||||||||
---------------------------------------------------------gtatgtgtgatcttcg--cgctcttgggtttagggttcttgggcttttcttttgg-cagattga--------------agagtaac--gattttgtgtgatgatcat--------ctacccagGTCCTGGAGCTGGCCGGGAATGCTGCCCGCGACAATAAGAAGAACAGGATCATCCCCAGACACATACAGCTCGCTGTGAGGAACGACGAGGAGCTGAGCA

upper sequence: GLYMA19G42760.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ29068 (Selaginella moellendorffii), 3'ss of exon 1
gtttgttttggattgtcgattaggtttagatttgattagttcttgtgtttttgatcagtctgtttggtcttggtttaatttttgttttaaagttttgattttttattgtgttctgattgacctaattttattttgaatcaatcgaatttggtttgttgatgatgtgtgtttt-tgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATTGTTCCTAGGCACATTCAGCTTGCTGTGAGGAACGATGAGGAGCTGAGCA
                                                                                                       |    |  | || | | |    ||||   | |  ||||||    |  || |   |||   ||  ||    |    ||||  | ||  | ||||| || || ||  ||||||||||||||||||| ||  | || |||||||| ||||| || ||||||||||| |||||||| ||||
------------------------------------------------------------------------------------------------------gtgagattctttgctcgtctc--tttttcgtcgtctcaatc--tctcagtctcgggatttcgttcgtcccattcccagGTGATCGAGCTCGCTGGAAACGCCGCGCGGGATAACAAGAAGAATCGGATCATCCCCAGGCACATCCAGCTCGCCGTGAGGAACGACGAGGAGCTCAGCA

upper sequence: GLYMA19G42760.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ38642 (Selaginella moellendorffii), 3'ss of exon 1
gtttgttttggattgtcgattaggtttagatttgattagttcttgtgtttttgatcagtctgtttggtcttggtttaatttttgttttaaagttttgattttttattgtgttctgattgacctaattttattttgaatcaatcgaatttggtttgttgatgatgtgtgtt--tttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATTGTTCCTAGGCACATTCAGCTTGCTGTGAGGAACGATGAGGAGCTGAGCA
                                                                                   || |    | | |      | || |  ||  | ||       |||| |||       ||||||    |  |   |||  |||||| |  | |    ||||  ||||  |||| |||||||||||  | || || ||||||||  | ||  | || || ||||| ||||| |||||||||||||| |||||||||||||
-----------------------------------------------------------------------------------gtatgtgtgatcttcgcgctcatgggtttagggttcttgggcttttctttgtggcagatcgaa----gagtaacgattttgtgtgatgatctacccagGTCCTGGAGCTGGCCGGGAATGCTGCCCGCGACAATAAGAAGAACAGGATCATCCCCAGACACATACAGCTCGCTGTGAGGAACGACGAGGAGCTGAGCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311993|gb|FK004260.1|FK004260
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|7028129|gb|AW457912.1|AW457912
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|208106070|gb|GD904283.1|GD904283
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGA
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGA
EST: gi|193546478|gb|FK503607.1|FK503607
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|208184054|gb|GD983704.1|GD983704
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGA
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGA
EST: gi|208320370|gb|GE122091.1|GE122091
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|193490760|gb|FK457761.1|FK457761
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|193590696|gb|FK544569.1|FK544569
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|208128554|gb|GD927504.1|GD927504
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|208049346|gb|GD849299.1|GD849299
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAA
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAA
EST: gi|23731471|gb|BU763862.1|BU763862
EST:     TCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: TCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|208267369|gb|GE063660.1|GE063660
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|193409377|gb|FK374627.1|FK374627
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|193376260|gb|FK339601.1|FK339601
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGG
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGG
EST: gi|208275019|gb|GE068525.1|GE068525
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|192300466|gb|FG988853.1|FG988853
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|193316165|gb|FK281447.1|FK281447
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|208272515|gb|GE067001.1|GE067001
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGACTAGGGATAACAAGA
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTG-CTAGGGATAACAAGA
EST: gi|208229603|gb|GE026010.1|GE026010
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|8827125|gb|BE210855.1|BE210855
EST:     TGGTGCTTCCTGTGT-CCTCT-TGCA-T-CTCGA-TATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATA
genomic: TGGTGCT-CCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATA
EST: gi|192309653|gb|FK001001.1|FK001001
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|192332071|gb|FK024559.1|FK024559
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|58019585|gb|CX706327.1|CX706327
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|192303129|gb|FG994247.1|FG994247
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|208337626|gb|GE136450.1|GE136450
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|19345892|gb|BM890772.1|BM890772
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|7589409|gb|AW705183.1|AW705183
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|207778736|gb|GD746737.1|GD746737
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|208237570|gb|GE028410.1|GE028410
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGA
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGA
EST: gi|151393025|gb|EV262900.1|EV262900
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|24136386|gb|BU926896.1|BU926896
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|4301757|gb|AI443236.1|AI443236
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|58015244|gb|CX701986.1|CX701986
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|192303257|gb|FG997371.1|FG997371
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|208204909|gb|GE002800.1|GE002800
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|17400467|gb|BM177249.1|BM177249
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|15661875|gb|BI699246.1|BI699246
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|6846773|gb|AW349063.1|AW349063
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|208212676|gb|GE014479.1|GE014479
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|193455187|gb|FK417778.1|FK417778
EST:     TGCTCGAGTATCTCGCTGCTGAG                         G-TTTGGAATTGGCTGGGAATGCTGCTAGGGATAGCAAGAAGAATCGTATT
genomic: TGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|193380287|gb|FK348721.1|FK348721
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|208231289|gb|GE029404.1|GE029404
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGA
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGA
EST: gi|14516555|gb|BI095227.1|BI095227
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|31464246|gb|CD406274.1|CD406274
EST:     CTGGTGCTCCTGTGTACCTCTCTCCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|208310998|gb|GE104650.1|GE104650
EST:     ATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: ATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|193434887|gb|FK402887.1|FK402887
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|207717085|gb|GD699035.1|GD699035
EST:     CTGGTGCTCCTGTGCACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|31307727|gb|CD392930.1|CD392930
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|7029188|gb|AW458971.1|AW458971
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTG
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTG
EST: gi|10843017|gb|BF067142.1|BF067142
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|17152873|gb|BM142806.1|BM142806
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|193497700|gb|FK461646.1|FK461646
EST:     TGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAGCAAGAAGAATCGTATT
genomic: TGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|192305370|gb|FG994248.1|FG994248
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|298180117|gb|HO025332.1|HO025332
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
EST: gi|192303256|gb|FG997370.1|FG997370
EST:     CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT
genomic: CTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGgtttgttttg ... ttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttattttgaatcaatcgaatttggtttgttgatgatgtgtgtttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATTGTTCCTAGGCACATTCAGCTTGCTGTGAGGAACGATGAGGAGCTGAGCA
                                            tttttgttt  CT-rich tract
                                            tttttgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgttttggattgtcgattaggtttagatttgattagttcttgtgtttttgatcagtctgtttggtcttggtttaatttttgttttaaagttttgattttttattgtgttctgattgacctaattttattttgaatcaatcgaatttggtttgttgatgatgtgtgtttttgtttagGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATTGTTCCTAGGCACATTCAGCTTGCTGTGAGGAACGATGAGGAGCTGAGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA