1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtagcacataccttgcatttgaaaccctagcctagatggttctctgcttcagttcctaatcggtaataattctcttttggctattgcagGATCAGGTGCTCCTCGTCCTTCACGATGGCGGGAACTGAAGCCAAAAAAACTGAATCCAAAAAACCTGCCGCTAAGCAATCCG
species | Glycine max |
transcript | GLYMA19G40930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTAGGGTCAACCGTGACGCCACAATCGCCTTCGGCATCTTTGCAACGG GATCAGGTGCTCCTCGTCCTTCACGATGGCGGGAACTGAAGCCNNNNNNNCEST: gi|208254248|gb|GE052054.1|GE052054
genomic: ACCTAGGGTCAACCGTGACGCCACAATCGCCTTCGGCATCTTTGCAACGGgtagcacata ... gctattgcagGATCAGGTGCTCCTCGTCCTTCACGATGGCGGGAACTGAAGCCAAAAAAAC
EST: ACCTAGGGTCAACCGTGACGCCACAATCGCCTTCGGCATCTTTGCAACGG GATCAGGTGCTCCTCGTCCTTCACGATGGCGGGAACGTGAAGEST: gi|209700498|gb|BW664460.1|BW664460
genomic: ACCTAGGGTCAACCGTGACGCCACAATCGCCTTCGGCATCTTTGCAACGGgtagcacata ... gctattgcagGATCAGGTGCTCCTCGTCCTTCACGATGGCGGGAAC-TGAAG
EST: ACCTAGGGTCAACCGTGACGCCACAATCGCCTTCGGCATCTTTGCAACGG GATCAGGTGCTCCTCGTCCTTCACGATGGCGGGAACTGAAGCCNNNNNNNCEST: gi|213604934|gb|DB956323.1|DB956323
genomic: ACCTAGGGTCAACCGTGACGCCACAATCGCCTTCGGCATCTTTGCAACGGgtagcacata ... gctattgcagGATCAGGTGCTCCTCGTCCTTCACGATGGCGGGAACTGAAGCCAAAAAAAC
EST: ACCTAGGGTCAACCGTGACGCCACAATCGCCTTCGGCATCTTTGCAACGG GATCAGGTGCTCCTCGTCCTTCACGATGGCGGGAACTGAAGCCNNNNNNNC
genomic: ACCTAGGGTCAACCGTGACGCCACAATCGCCTTCGGCATCTTTGCAACGGgtagcacata ... gctattgcagGATCAGGTGCTCCTCGTCCTTCACGATGGCGGGAACTGAAGCCAAAAAAAC
gatggttctctgcttcagttcctaatcggtaataattctcttttggctattgcagGATCAGGTGCTCCTCGTCCTTCACGATGGCGGGAACTGAAGCCAAAAAAACTGAATCCAAAAAACCTGCCGCTAAGCAATCCG
tcctaat putative branch site (score: 2)
taataattctctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcacataccttgcatttgaaaccctagcctagatggttctctgcttcagttcctaatcggtaataattctcttttggctattgcagGATCAGGTGCTCCTCGTCCTTCACGATGGCGGGAACTGAAGCCAAAAAAACTGAATCCAAAAAACCTGCCGCTAAGCAATCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA