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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattacctcttcttctccaaacctcattctcttcaaacgctaacgttcaatttttaagcgcagtgggattcgactttccccgactgatcatagtatctgaagctctagggtcccgtaactgttaaattgacctttcagtatatattaatttgacctttttaaccccattctccgtttactccttcttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG

Basic information

species Glycine max
transcript GLYMA19G39780.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39780.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0060g02240.t01 (Vitis vinifera), 3'ss of exon 1
gtaattacctcttcttctccaaacctcattctcttcaaacgctaacgttcaatttttaagcgcagtgggattcgactttccccgactgatcatagtatctgaagctctagggtcccgtaactgttaaattgacctttcagtatatattaatttgacctttttaaccccattctccgtttactccttcttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
                                                                      | ||   | |||  |||||    ||| |    ||   ||||||   ||      || | |  |  ||   ||||| || ||||    ||| |      |   | |  ||  | | | || |||||||||||||| || ||||||||||| ||||| |||||||||
---------------------------------------------------------------------gtacgctataccc--actgaattcagttt----agggttagggtttggtg-----tacagtatctatt---tatatcttcattta---tttgtgttttaacgattcagttgtttcgtttttcagCTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286667|gb|BI470558.1|BI470558
EST:     TTTGAAACTCACAGCTTCAATCCTCGACCACACCACCCATCAGCGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACTCACAGCTTCAATCCTCGACCACACCACCCATCAGCGACATGgtaattacct ... cttcttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtatatattaatttgacctttttaaccccattctccgtttactccttcttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
                    ttttaac  putative branch site (score: 2)
                 cctttttaaccccatt  CT-rich tract
     atattaatttgacctt  TA-rich tract