Sequence
atgc intronic sequence ATGC exonic sequence...atacattgcctttatgtaagttttctgctgagctgatgcagatctaaatattgaactttttgcatctatcatttgacactcgtttggtcatctttggaagGTATCGTGTACAGAGTGATAAAAAGGTTGCTGTTTGTAGTGTACATCCTTCTGAGCCGGCCACACTGCAGTGCCTAGGTTGTGTAAAGTCTAAAATACCT
Basic information
species | Glycine max |
transcript | GLYMA19G39210.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G39210.2 (Glycine max), 3'ss of exon 1
lower sequence: AT3G58560.1 (Arabidopsis thaliana), 3'ss of exon 1
atacattgcctttatgtaa-gttttctgctgagctgatgcaga---tctaaatattgaactttttgcatctatcatttgacactcgtttggtcatctttggaagGTATCGTGTACAGAGTGATAAAAAGGTTGCTGTTTGTAGTGTACATCCTTCTGAGCCGGCCACACTGCAGTGCCTAGGTTGTGTAAAGTCTAAAATACCT
||| | | || | ||||| | | | || | ||| | | | || | | | | | | | | |||||| | | |||| ||| |||||||||||||| || ||||| |||||||||| ||||| || ||| |||| ||| ||||||| || || ||| ||||||||||| | |||
----tttgagtgtgaaaaatgatttctttaattgtaaagtagggtttataagtctccagtcttgtcttttggttctgtattaaaagatgcatcatctgttgcagGTTTCGAGTACAGAGTGATAAGAAAGTTGCGATTTGTAGTGTGCATCCATCCGAGACGGCAACATTGCAGTGTCTGGGATGTCTAAAGTCTAAAGTTCCT
upper sequence: GLYMA19G39210.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0007g07020.t01 (Vitis vinifera), 3'ss of exon 1
atacattgcctttat--gtaagttttctgctgagctgatgcagatctaaatattgaactttttgcatctatcatttgacactcgtttggtcatctttggaagGTATCGTGTACAGAGTGATAAAAAGGTTGCTGTTTGTAGTGTACATCCTTCTGAGCCGGCCACACTGCAGTGCCTAGGTTGTGTAAAGTCTAAAATACCT
| || || ||| || | | | | | || | | | || | | | | || | || | | || | | | | | | ||||||||| |||| || |||| ||| || ||||| |||||||||||||| ||||||| ||||| |||||||| |||||||||| ||| | |||||||||
-ttcaacatctgtatctgttaatgagtggtttaaaacattgggtttcagctagtaatatccagatttatacaaattttctgttgtcggatt-tatattgcagGTATCGTATACAAAGCGATAGAAAAGTAGCTGTCTGTAGTGTACATCCATCTGAGCATGCCACTTTGCAGTGCTTAGGTTGTGTGAAGGCCAAAATACCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatattgaactttttgcatctatcatttgacactcgtttggtcatctttggaagGTATCGTGTACAGAGTGATAAAAAGGTTGCTGTTTGTAGTGTACATCCTTCTGAGCCGGCCACACTGCAGTGCCTAGGTTGTGTAAAGTCTAAAATACCT
tcatcttt CT-rich tract
aacttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atacattgcctttatgtaagttttctgctgagctgatgcagatctaaatattgaactttttgcatctatcatttgacactcgtttggtcatctttggaagGTATCGTGTACAGAGTGATAAAAAGGTTGCTGTTTGTAGTGTACATCCTTCTGAGCCGGCCACACTGCAGTGCCTAGGTTGTGTAAAGTCTAAAATACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG