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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgatacatatttacctgtcacggtgaccaattagctgtgatgcattaaacccaattgttttccacattcatctcataaaaactgttgattgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCGTACTGGATCCAGAGGACAAGTGACCCAGGTTAGAGTGAAGTTTTTGGAT

Basic information

species Glycine max
transcript GLYMA19G39070.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39070.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G455828_T01 (Zea mays), 3'ss of exon 1
gtgatacatatttacc-tgtcacggtgaccaattagctgtgatgcattaaacccaattgttt--tccacattcatctcataaaaactgttgattgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCGTACTGGATCCAGAGGACAAGTGACCCAGGTTAGAGTGAAGTTTTTGGAT---
    ||   |   ||| ||| || |||  || |||    |||   ||   | | ||   | |  | ||| || ||  | | | || || |  || | ||   |||| |||||  | ||||||||||  ||  |||| || || || |||||  | || || ||||| || || ||||||||||| ||||||||||||||||||   
ccagtagcaacaaaccatgtgacagtg--cagttaaa-atgaactatgtgatcaaagcatatggttcaccttgattac-tgacaaatgct--ttctattaatgcagCATGGACACCCAGGTGAAGCTTGCTGTTGTGGTGAAGGTGATGGGCAGGACCGGCTCCAGGGGTCAGGTGACCCAGGTCAGAGTGAAGTTTTTGGATGAC

upper sequence: GLYMA19G39070.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G10090.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgatacatatttacctgtcacggtgaccaattagctgtgatgcattaaacccaattgttttccacattcatctcataaaaactgttgattgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCGTACTGGATCCAGAGGACAAGTGACCCAGGTTAGAGTGAAGTTTTTGGAT---
   |||||   ||   |   |  |||| |||||  || |     |  |    || || ||||  | | |    ||    ||  | ||  || ||||  | ||| ||||| |||||| | ||||||||  |||| || ||||| |||||  | |||||||| || || |||||||| |||||||||||||||||    ||    
--tatacagtcttgatt-caaatgtgaacaattctctttttctaaggattttcacttcttttgtaaaatttggtctctgaatgtttttgttttgttgaatcagAATGGATTCTCAGATCAAGCACGCTGTTGTAGTGAAAGTGATGGGAAGGACTGGATCAAGGGGTCAAGTGACTCAGGTTAGAGTGAAGTTCACTGACTCG

upper sequence: GLYMA19G39070.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0007g07210.t01 (Vitis vinifera), 3'ss of exon 1
gtgatacatatttacctgtcacggtgaccaattagctgtgatgcattaaacccaa--ttgttttccacattcatctcataaaaactgttgattgtgtttga-------gCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCGTACTGGATCCAGAGGACAAGTGACCCAGGTTAGAGTGAAGTTTTTGGAT
     |    ||| | | | |  |  ||     ||     |   ||||||   ||  | ||  |    ||| ||   || | |||     ||| | ||||        ||   |||||  |   ||||||||| ||  | || || |||||||||||||| |||||||| || || || ||||| ||||| ||||||||||||||||  
----aatgagtttgctt-ttatag-aacttgaaaggaaaaaccaattaaatgaaaaatggtgcttagtatttatga-attataaccagcaattttctttggcagcagTGCGAAATGGATGCCGGGGTGAAGCATGCTGTGGTGGTGAAAGTTATGGGTCGAACTGGATCAAGGGGTCAGGTGACACAGGTGAGAGTGAAGTTTTTGG--

upper sequence: GLYMA19G39070.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0007g07210.t01 (Vitis vinifera), 3'ss of exon 4
gtgatacatatttacctgtcacggtgaccaattagctgtgatgcattaaaccc-aattgttttccacattcatctcataaaaactgttgattgtgtttga---gCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCGTACTGGATCCAGAGGACAAGTGACCCAGGTTAGAGTGAAGTTTTTGGAT
   |||||||||        |   |    || |||     |   |  |      ||||| |  ||  || |||||  || |||   ||   | ||||||    |||  ||||| |||  ||||||||| ||  | || || |||||||||||||| ||||| || ||||| || ||||||||||| || |||||||||||||  
--tatacatattctttaaatagtctatgtaactagaaagaaaatacaatcttttaattgatgcccttatgcatctattataaatgattttgtttgtttgcagTGCAAAATGGAATCTGGGGTGAAGCATGCTGTGGTGGTGAAAGTTATGGGTCGAACTGGCTCAAGAGGTCAGGTGACCCAGGTGAGGGTGAAGTTTTTGG--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208195027|gb|GD992132.1|GD992132
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|208302242|gb|GE100385.1|GE100385
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|208164511|gb|GD964081.1|GD964081
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|207725524|gb|GD704116.1|GD704116
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|208078731|gb|GD874499.1|GD874499
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|208050477|gb|GD845560.1|GD845560
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|208157364|gb|GD952956.1|GD952956
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTACAAAAGTTATGGGT
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGT-C-AAAGTTATGGGT
EST: gi|31463071|gb|CD405099.1|CD405099
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|193729592|gb|FK666106.1|FK666106
EST:     AAGCAAAACCCTAGCGGCGCCTGCTTTCTTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: AAGCAAAACCCTAGCGGCGCCTGCTTTC-TTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|208132426|gb|GD933019.1|GD933019
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|207770458|gb|GD744172.1|GD744172
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|208042316|gb|GD838264.1|GD838264
EST:     CGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|208048140|gb|GD845321.1|GD845321
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|193727475|gb|FK664119.1|FK664119
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|208244259|gb|GE042528.1|GE042528
EST:     TGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: TGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|207781135|gb|GD753140.1|GD753140
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|207710553|gb|GD690789.1|GD690789
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|6951432|gb|AW423500.1|AW423500
EST:     AGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAAGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: AGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|207808351|gb|GD780506.1|GD780506
EST:     CTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|208040815|gb|GD839010.1|GD839010
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|193450118|gb|FK415626.1|FK415626
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTATCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|193406273|gb|FK373496.1|FK373496
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|193663857|gb|FK612443.1|FK612443
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTCCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|193426480|gb|FK386175.1|FK386175
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|208305710|gb|GE103999.1|GE103999
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|193477701|gb|FK442290.1|FK442290
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAG                         C
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgag-
EST: gi|193477701|gb|FK442290.1|FK442290
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAG                         C
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgag-
EST: gi|193477701|gb|FK442290.1|FK442290
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAG                         C
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgag-
EST: gi|193477701|gb|FK442290.1|FK442290
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAG                         C
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgag-
EST: gi|193477701|gb|FK442290.1|FK442290
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAG                         C
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgag-
EST: gi|193490648|gb|FK457733.1|FK457733
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|208151379|gb|GD946454.1|GD946454
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|208216300|gb|GE009390.1|GE009390
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|208040496|gb|GD841282.1|GD841282
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
EST: gi|207814523|gb|GD787648.1|GD787648
EST:     CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCAT---                         CAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG
genomic: CAAGCAAAACCCTAGCGGCGCCTGCTTTCTTTGTTCGTGTTTTGCATCAGgtgcgaactc ... tgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaacccaattgttttccacattcatctcataaaaactgttgattgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCGTACTGGATCCAGAGGACAAGTGACCCAGGTTAGAGTGAAGTTTTTGGAT
                                      tgttgat  putative branch site (score: 4)
        aattgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgatacatatttacctgtcacggtgaccaattagctgtgatgcattaaacccaattgttttccacattcatctcataaaaactgttgattgtgtttgagCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTTATGGGTCGTACTGGATCCAGAGGACAAGTGACCCAGGTTAGAGTGAAGTTTTTGGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - -ctgtcac
- - - - - - - - - - - - - - - - - gctgtga
- - - - - - - - - - - - - - - - - - - - -tgcatta
- - - - - - - - - - - - - - - - - - - - - - - - aacccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttga