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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaagacacttgcgttttgattaattgagatttaagctgaaaccaactaactatttcttttccttgcaatgaaacgaaacaaaacaaatgcagATATAGCCGTCAACTTCACCG

Basic information

species Glycine max
transcript GLYMA19G38780.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332143|gb|FK026381.1|FK026381
EST:     CTGCAACTGGTCGTCAATCCAATCAGCCATGGCAGGCATTCGAATGATAG                         ATATAGCCGTCAACTTCACCG
genomic: CTGCAACTGGTCGTCAATCCAATCAGCCATGGCAGGCATTCGAATGATAGgtaagaaaga ... acaaatgcagATATAGCCGTCAACTTCACCG
EST: gi|298194140|gb|HO040788.1|HO040788
EST:     CTGCAACTGGTCGTCAATCCAATCAGCCATGGCAGGCATTCGAATGATAG                         ATATAGCCGTCAACTTCACCG
genomic: CTGCAACTGGTCGTCAATCCAATCAGCCATGGCAGGCATTCGAATGATAGgtaagaaaga ... acaaatgcagATATAGCCGTCAACTTCACCG
EST: gi|298166829|gb|HO010268.1|HO010268
EST:     CTGCAACTGGTCGTCAATCCAATCAGCCATGGCAGGCACTCGAATGATAG                         ATATAGCCGTCAACTTCACCG
genomic: CTGCAACTGGTCGTCAATCCAATCAGCCATGGCAGGCATTCGAATGATAGgtaagaaaga ... acaaatgcagATATAGCCGTCAACTTCACCG
EST: gi|120492279|gb|EH220446.1|EH220446
EST:     ATCAGCCATGGCAGGCATTCGAATGATAG                         ATATAGCCGTCAACTTCACCG
genomic: ATCAGCCATGGCAGGCATTCGAATGATAGgtaagaaaga ... acaaatgcagATATAGCCGTCAACTTCACCG
EST: gi|192323850|gb|FK015631.1|FK015631
EST:     CTGCAACTGGTCGTCAATCCAATCAGCCATGGCAGGCATTCGAATGATAG                         ATATAGCCGTCAACTTCACCG
genomic: CTGCAACTGGTCGTCAATCCAATCAGCCATGGCAGGCATTCGAATGATAGgtaagaaaga ... acaaatgcagATATAGCCGTCAACTTCACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaccaactaactatttcttttccttgcaatgaaacgaaacaaaacaaatgcagATATAGCCGTCAACTTCACCG
      aactaac  putative branch site (score: 1)
         taactatttctttt  TA-rich tract