1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttcgttcttttctttctttctcttcgcttcttcccactttcttctctcatcttctgttttactcgttctagAGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAG
species | Glycine max |
transcript | GLYMA19G38280.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCCGCGCATGTCTCCTTCTACGACTTCAACATCGAAAGCAACCAGTGG AGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAGEST: gi|208054216|gb|GD854409.1|GD854409
genomic: CCGCCGCGCATGTCTCCTTCTACGACTTCAACATCGAAAGCAACCAGTGGgttcgttctt ... ctcgttctagAGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAG
EST: CCGCCGCGCATGTCTCCTTCTACGACTTCAACATCGAAAGCAACCAGTGG AGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAGEST: gi|207720356|gb|GD703065.1|GD703065
genomic: CCGCCGCGCATGTCTCCTTCTACGACTTCAACATCGAAAGCAACCAGTGGgttcgttctt ... ctcgttctagAGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAG
EST: CCGCCGCGCATGTCTCCTTCTACGACTTCAACATCGAAAGCAACCAGTGG AGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAGEST: gi|19935333|gb|BQ080363.1|BQ080363
genomic: CCGCCGCGCATGTCTCCTTCTACGACTTCAACATCGAAAGCAACCAGTGGgttcgttctt ... ctcgttctagAGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAG
EST: CCGCCGCGCATGTCTCCTTCTACGACTTCAACATCGAAAGCAACCAGTGG AGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAG
genomic: CCGCCGCGCATGTCTCCTTCTACGACTTCAACATCGAAAGCAACCAGTGGgttcgttctt ... ctcgttctagAGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAG
tttctcttcgcttcttcccactttcttctctcatcttctgttttactcgttctagAGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAG
cttcttcccactttct CT-rich tract
tgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgttcttttctttctttctcttcgcttcttcccactttcttctctcatcttctgttttactcgttctagAGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG