1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtaagtgtaaagctaaactctctgagttttgtagcatgattgattatattctaatataaggtaaatcaacttttaacgatctctttcctggacttgcagCCTTGCTGGGTTGGCTTTTATGTTTTCAGCTAGCATTTTGCTTCAGATTCTG
species | Glycine max |
transcript | GLYMA19G38220.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG TEST: gi|192302966|gb|FG996982.1|FG996982
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG TEST: gi|298163396|gb|HO012129.1|HO012129
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: CGGGCGAGAGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG TEST: gi|298163396|gb|HO012129.1|HO012129
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: CGGGCGAGAGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG TEST: gi|192302967|gb|FG996983.1|FG996983
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG TEST: gi|192302967|gb|FG996983.1|FG996983
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG TEST: gi|298173126|gb|HO020110.1|HO020110
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: CGGGCGAGAGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG TEST: gi|298173126|gb|HO020110.1|HO020110
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: CGGGCGAGAGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG TEST: gi|151410169|gb|EV279977.1|EV279977
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG TEST: gi|151410169|gb|EV279977.1|EV279977
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG TEST: gi|208310530|gb|GE104182.1|GE104182
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG CCTTGCTGGGTTGGCTTTTATGTTTTCAGCTAGCATTTTGCTTCAGATTCTEST: gi|192331598|gb|FK023445.1|FK023445
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcagCCTTGCTGGGTTGGCTTTTATGTTTTCAGCTAGCATTTTGCTTCAGATTCT
EST: CCGGCGAGCGACATAAGGTCCCTTCTCAGACATGGCGATGACAGTACACG TEST: gi|192331598|gb|FK023445.1|FK023445
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: CCGGCGAGCGACATAAGGTCCCTTCTCAGACATGGCGATGACAGTACACG TEST: gi|298182158|gb|HO026333.1|HO026333
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: CGGGCGAGAGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG TEST: gi|298182158|gb|HO026333.1|HO026333
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: CGGGCGAGAGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG TEST: gi|192298572|gb|FG989233.1|FG989233
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG TEST: gi|192298572|gb|FG989233.1|FG989233
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
tatattctaatataaggtaaatcaacttttaacgatctctttcctggacttgcagCCTTGCTGGGTTGGCTTTTATGTTTTCAGCTAGCATTTTGCTTCAGATTCTG
ttttaac putative branch site (score: 2)
tctctttcctg putative PPT
taatataaggtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaagtgtaaagctaaactctctgagttttgtagcatgattgattatattctaatataaggtaaatcaacttttaacgatctctttcctggacttgcagCCTTGCTGGGTTGGCTTTTATGTTTTCAGCTAGCATTTTGCTTCAGATTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - gctaaac
- - - - - - - - - - - ctgagtt
- - - - - - - - - - - - - - - - - gcatgat