Sequence
atgc intronic sequence ATGC exonic sequence...tccaaattctggctcttttatcattcttgttgcataagttcatttgttgaatttgtttcacttttatcttgcatgcacatctctaatacttattatttagGTTAAGCGATGCAATCACAGATAATAGAAGAACAGTTGCTGAGGTGAAAAGTGAAAATTTGGAGATGCAATCCTGGGCTGATCTCCCTGCTGAACTCTTA
Basic information
species | Glycine max |
transcript | GLYMA19G38070.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16347539|gb|BI973134.1|BI973134EST: ATTAATTGGCTTCGCAAAATGTCGGGGAAGAGAAAGAGGAAGTTGAAATT GTTAAGCGATGCAATCACAGATAATAGAAGAACAGTTGCTGAGGTGAAAAG
genomic: ATTAATTGGCTTCGCAAAATGTCGGGGAAGAGAAAGAGGAAGTTGAAATTgtaagttata ... tattatttagGTTAAGCGATGCAATCACAGATAATAGAAGAACAGTTGCTGAGGTGAAAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgaatttgtttcacttttatcttgcatgcacatctctaatacttattatttagGTTAAGCGATGCAATCACAGATAATAGAAGAACAGTTGCTGAGGTGAAAAGTGAAAATTTGGAGATGCAATCCTGGGCTGATCTCCCTGCTGAACTCTTA
ctctaat putative branch site (score: 3)
atctctaatacttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tccaaattctggctcttttatcattcttgttgcataagttcatttgttgaatttgtttcacttttatcttgcatgcacatctctaatacttattatttagGTTAAGCGATGCAATCACAGATAATAGAAGAACAGTTGCTGAGGTGAAAAGTGAAAATTTGGAGATGCAATCCTGGGCTGATCTCCCTGCTGAACTCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - ttctggc
- - - - - - - - - - - - - - - tgcataa
- - - - - - - - - - - - - - - - - - - - - - tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgcac