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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttcgctttggcactcttactatctttcaacgccatttgccattttgttataatcgtcgcttctgttttcagAATAATAATCTGAGACGACCAACCTCAGCCTCTTACCATGAG

Basic information

species Glycine max
transcript GLYMA19G37980.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298168882|gb|HO009812.1|HO009812
EST:     CCGGATAGGCGGCTAAG                         AATAATAATCTGAGACGACCAACCTCAGCCTCTTACCATGAG
genomic: CCGGATAGGCGGCTAAGgtaggttcgc ... ctgttttcagAATAATAATCTGAGACGACCAACCTCAGCCTCTTACCATGAG
EST: gi|192326190|gb|FK016982.1|FK016982
EST:     AATTGTACCCGGATAGGCGGCTAAG                         AATAATAATCTGAGACGACCAACCTCAGCCTCTTACCATGAG
genomic: AATTGTACCCGGATAGGCGGCTAAGgtaggttcgc ... ctgttttcagAATAATAATCTGAGACGACCAACCTCAGCCTCTTACCATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactatctttcaacgccatttgccattttgttataatcgtcgcttctgttttcagAATAATAATCTGAGACGACCAACCTCAGCCTCTTACCATGAG
 ctcttac  putative branch site (score: 3)
                                       tcgcttctgttttc  putative PPT
                        attttgttataat  TA-rich tract