Sequence
atgc intronic sequence ATGC exonic sequence...tgtggaatagggttttttgatgttatattatgttgttgcatcctattggtgctatagaaggtgaacatggttttgtttgttggatcagtgttgcaatcagGGTATTGGGGTAGAGGAGCGATGGATCCGGAGCCAGGGCGGTGCCGGAGAACCGACGGCAAGAAATGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAA
Basic information
species | Glycine max |
transcript | GLYMA19G37740.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G37740.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0007g03760.t01 (Vitis vinifera), 3'ss of exon 2
tgtggaatagggttttttgatgttatattatgttgttgcatcctattggtgctatagaaggt----gaacatgg--ttttgttt------gttggat---cagtgttgcaatcagGGTATTGGGGTAGAGGAGCGATGGATCCGGAGCCAGGGCGGTGCCGGAGAACCGACGGCAAGAAATGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAA
|| ||||| || | | || | | | | ||| | || | | |||||| || |||||||| ||||||| | || || ||||||||||||||||||| ||||| |||| || |||||||||||||| ||||| ||||| ||||| ||||| || |||||| ||||||| |||||||||||
-atgtaatagcgtagtgactaggcatttcaaatgttagcaagc-atagat-ttatagatggctgtcgaacatggggctttgtttaaacatgctgtatttgcagTGTTGCAATCAGGGTACTGGGGAAGAGCTGCAATGGATCCGGAGCCCGGGCGTTGCCGAAGAACAGACGGTAAAAAATGGAGGTGCTCAAGGGACGTGGT------------ atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggtgctatagaaggtgaacatggttttgtttgttggatcagtgttgcaatcagGGTATTGGGGTAGAGGAGCGATGGATCCGGAGCCAGGGCGGTGCCGGAGAACCGACGGCAAGAAATGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAA
ttttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtggaatagggttttttgatgttatattatgttgttgcatcctattggtgctatagaaggtgaacatggttttgtttgttggatcagtgttgcaatcagGGTATTGGGGTAGAGGAGCGATGGATCCGGAGCCAGGGCGGTGCCGGAGAACCGACGGCAAGAAATGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - -gggtttt
- - - - - - - - -tgatgtt
- - - - - - - - - - - - - - - - - - tgcatcc
- - - - - - - - - - - - - - - - - - - - - - - tggtgct