1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttgttatacatatttatgtagcgtgtgtgtgtatacaattttgtcatttatactcaaattgatatgtaattgaataatcccaaacttattctatttgagGAATATCAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCGCTTGTTCGAAAAAGAATTGATTCCGTAAACAAAGAATTAAAGCCACTGG
species | Glycine max |
transcript | GLYMA19G37700.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCTTGGTCGTGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAG GA------G---CTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCGEST: gi|192315918|gb|FK008815.1|FK008815
genomic: AGCTTGGTCGTGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAGgtatctctct ... tctatttgagGAATATCAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCG
EST: AGCTTGGTCGTGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGT--- G------AGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCGEST: gi|27809244|gb|CB063666.1|CB063666
genomic: AGCTTGGTCGTGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAGgtatctctct ... tctatttgagGAATATCAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCG
EST: AGCTTGGTCGTGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAG GA------G---CTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCGEST: gi|14125837|gb|BG790275.1|BG790275
genomic: AGCTTGGTCGTGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAGgtatctctct ... tctatttgagGAATATCAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCG
EST: AGCTTGGTCGTGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAG GA------G---CTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCGEST: gi|151405325|gb|EV275139.1|EV275139
genomic: AGCTTGGTCGTGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAGgtatctctct ... tctatttgagGAATATCAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCG
EST: AGCTTGGTCGTGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAG GAATATCAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCG
genomic: AGCTTGGTCGTGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAGgtatctctct ... tctatttgagGAATATCAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCG
catttatactcaaattgatatgtaattgaataatcccaaacttattctatttgagGAATATCAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCGCTTGTTCGAAAAAGAATTGATTCCGTAAACAAAGAATTAAAGCCACTGG
aattgat putative branch site (score: 4)
cttattct putative PPT
aaattgatatgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgttatacatatttatgtagcgtgtgtgtgtatacaattttgtcatttatactcaaattgatatgtaattgaataatcccaaacttattctatttgagGAATATCAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCGCTTGTTCGAAAAAGAATTGATTCCGTAAACAAAGAATTAAAGCCACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - -tatgtag
- - - - - - - - - - - -gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - actcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaact