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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgtgcaatgcaattttgtggtttaccgaatgcttctgtatctttagtttcgctaacaagttgcaggcatgcagAGTGCGCATGTGATGGCAATGGCTGTTCAAAAGCTTTACCCTGATGCAAAAGTCACAATTGGGCCTTGGATAGAAAATGGGTTTTATTATGACTTCGACA

Basic information

species Glycine max
transcript GLYMA19G37550.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37550.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv12s0057g00400.t01 (Vitis vinifera), 3'ss of exon 1
---------------------gtgatgtgcaatgcaattttgtgg--tttaccgaatgcttctgtatctttagtttcgctaacaagttgcaggcatgcagAGTGCGCATGTGATGGCAATGGCTGTTCAAAAGCTTTACCCTGATGCAAAAGTCACAATTGGGCCTTGGATAGAAAATGGGTTTTATTATGACTTCGACA
                     ||    |      || |||| | |  | |||      ||||   |  || | ||    ||      | || | || ||| |||| ||||| ||||| ||||||||||| ||||| | ||| ||||||||||| |||||||| || |||||||||||||||||||||||||| || || |
ttgaatattggtgcatatatggtcggttctgtcacagtttttttggctgtactaccaacttcacaaaattcacttgttttatgtttatacatgaatacagTGTGCACATGTAATGGCTATGGCTGTTCAGAAGCTCTTCCCGGATGCAAAAGTGACAATTGGTCCATGGATAGAAAATGGGTTTTATTATGATTTTGATA

upper sequence: GLYMA19G37550.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S34_213V6.1 (Physcomitrella patens), 3'ss of exon 2
---------------------gtgatgtgcaatgcaatttt-gtggtttaccgaatgcttct-gtatctttagtttcgctaacaagttgcaggcatgcagAGTGCGCATGTGATGGCAATGGCTGTTCAAAAGCTTTACCCTGATGCAAAAGTCACAATTGGGCCTTGGATAGAAAATGGGTTTTATTATGACTTCGACA
                     ||  |  |  || | ||    ||| || |  | ||   ||| |     ||||  |  | |     |  | |   | ||||||||||||||| |||||||||| || || |||||||  ||||||||  | || || || || |||||||| || || || || ||||| || || || |
gtatgtccaattcctgacgtagtatttggtgattctatgcaagtgattcatggtatttgtcttgcgggattagactgaccatatcttgtcggttttacagAGTGCGCATGTGTTGGCAATGGCCGTACAGAAGCTTTTTCCTGATGCGCAGGTAACGATCGGCCCTTGGATTGAGAAGGGCTTCTATTACGATTTTGATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttaccgaatgcttctgtatctttagtttcgctaacaagttgcaggcatgcagAGTGCGCATGTGATGGCAATGGCTGTTCAAAAGCTTTACCCTGATGCAAAAGTCACAATTGGGCCTTGGATAGAAAATGGGTTTTATTATGACTTCGACA
                               cgctaac  putative branch site (score: 2)
                   tatcttta  TA-rich tract