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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagcatatatgaatttctgatttgatagcaattaatagtatatatgaatttctgatttggtagagattaatagcatatatgaattttcgattgtgtgcagGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCGTCGGTGGTGAGTTCACCAACTTCGTCGAGGCCTGTTACA

Basic information

species Glycine max
transcript GLYMA19G37230.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6454511|gb|AW185194.1|AW185194
EST:     TCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG                         GGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG
genomic: TCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattcttc ... ttgtgtgcagGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG
EST: gi|151403740|gb|EV273550.1|EV273550
EST:     ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG                         GGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattcttc ... ttgtgtgcagGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG
EST: gi|193327491|gb|FK297278.1|FK297278
EST:     ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG                         GGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattcttc ... ttgtgtgcagGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG
EST: gi|151404632|gb|EV274446.1|EV274446
EST:     ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG                         GGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattcttc ... ttgtgtgcagGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG
EST: gi|13563506|gb|BG551726.1|BG551726
EST:     ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG                         GGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattcttc ... ttgtgtgcagGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatttctgatttggtagagattaatagcatatatgaattttcgattgtgtgcagGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCGTCGGTGGTGAGTTCACCAACTTCGTCGAGGCCTGTTACA
                   gattaat  putative branch site (score: 3)
                    attaatagcatatatg  TA-rich tract