1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tagcatatatgaatttctgatttgatagcaattaatagtatatatgaatttctgatttggtagagattaatagcatatatgaattttcgattgtgtgcagGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCGTCGGTGGTGAGTTCACCAACTTCGTCGAGGCCTGTTACA
species | Glycine max |
transcript | GLYMA19G37230.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG GGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGEST: gi|151403740|gb|EV273550.1|EV273550
genomic: TCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattcttc ... ttgtgtgcagGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG
EST: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG GGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGEST: gi|193327491|gb|FK297278.1|FK297278
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattcttc ... ttgtgtgcagGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG
EST: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG GGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGEST: gi|151396713|gb|EV266586.1|EV266586
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattcttc ... ttgtgtgcagGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG
EST: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAAATTCTG GGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGEST: gi|151404632|gb|EV274446.1|EV274446
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattcttc ... ttgtgtgcagGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG
EST: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG GGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGEST: gi|13563506|gb|BG551726.1|BG551726
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattcttc ... ttgtgtgcagGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG
EST: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTG GGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG
genomic: ATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGgtaattcttc ... ttgtgtgcagGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTG
gaatttctgatttggtagagattaatagcatatatgaattttcgattgtgtgcagGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCGTCGGTGGTGAGTTCACCAACTTCGTCGAGGCCTGTTACA
gattaat putative branch site (score: 3)
attaatagcatatatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagcatatatgaatttctgatttgatagcaattaatagtatatatgaatttctgatttggtagagattaatagcatatatgaattttcgattgtgtgcagGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCGTCGGTGGTGAGTTCACCAACTTCGTCGAGGCCTGTTACA
- gcatata
- - - - - - - - -tgatttg