1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaccaatttgacgacgacccatgtttgcttttcgttaaacacagttaaatttgctatcttttcggaaacccttttgctctgattctgtttttcttttgctcagGTGTTTCAACATGGAGATCGATAAGGCAATTAGAGAGTGTGACGATCGAAGACTTCAGACCAAGTACAACAACGCTACCTATGTTGTTCAGAGAGCTTTG
species | Glycine max |
transcript | GLYMA19G36860.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACTTCACACACTCACACCTTGCTCCACCCCTTCTCCAATTCGCTACAAG GTGTTTCAACATGGAGATCGATAAGGCAATTAGAGAGTGTGACGATCGAAGEST: gi|192299088|gb|FG990402.1|FG990402
genomic: CACTTCACACACTCACACCTTGCTCCACCCCTTCTCCAATTCGCTACAAGgtaccaattt ... ttttgctcagGTGTTTCAACATGGAGATCGATAAGGCAATTAGAGAGTGTGACGATCGAAG
EST: CACTTCACACACTCACACCTTGCTCCACCCCTTCTCCAATTCGCTACAAG GTGTTTCAACATGGAGATCGATAAGGCAATTAGAGAGTGTGACGATCGAAGEST: gi|193671151|gb|FK607827.1|FK607827
genomic: CACTTCACACACTCACACCTTGCTCCACCCCTTCTCCAATTCGCTACAAGgtaccaattt ... ttttgctcagGTGTTTCAACATGGAGATCGATAAGGCAATTAGAGAGTGTGACGATCGAAG
EST: CACTTCACACACTCACACCTTGCTCCACCCCTTCTCCAATTCGCTACAAG GTGTTTCAACATGGAGATCGATAAGGCAATTAGAGAGTGTEST: gi|213614119|gb|DB964891.1|DB964891
genomic: CACTTCACACACTCACACCTTGCTCCACCCCTTCTCCAATTCGCTACAAGgtaccaattt ... ttttgctcagGTGTTTCAACATGGAGATCGATAAGGCAATTAGAGAGTGT
EST: CACTTCACACACTCACACCTTGCTCCACCCCTTCTCCAATTCGCTACAAG GTGTTTCAACATGGAGATCGATAAGGCAATTAGAGAGTGTGACGATCGAAGEST: gi|209727350|gb|BW655281.1|BW655281
genomic: CACTTCACACACTCACACCTTGCTCCACCCCTTCTCCAATTCGCTACAAGgtaccaattt ... ttttgctcagGTGTTTCAACATGGAGATCGATAAGGCAATTAGAGAGTGTGACGATCGAAG
EST: CACTTCACACACTCACACCTTGCTCCACCCCTTCTCCAATTCGCTACAAG GTGTTTCAACATGGAGATCGATAAGGCAATTAGAGAGTGTGACGATCGAAG
genomic: CACTTCACACACTCACACCTTGCTCCACCCCTTCTCCAATTCGCTACAAGgtaccaattt ... ttttgctcagGTGTTTCAACATGGAGATCGATAAGGCAATTAGAGAGTGTGACGATCGAAG
atttgctatcttttcggaaacccttttgctctgattctgtttttcttttgctcagGTGTTTCAACATGGAGATCGATAAGGCAATTAGAGAGTGTGACGATCGAAGACTTCAGACCAAGTACAACAACGCTACCTATGTTGTTCAGAGAGCTTTG
ctctgat putative branch site (score: 4)
cccttttgctctgatt CT-rich tract
tttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccaatttgacgacgacccatgtttgcttttcgttaaacacagttaaatttgctatcttttcggaaacccttttgctctgattctgtttttcttttgctcagGTGTTTCAACATGGAGATCGATAAGGCAATTAGAGAGTGTGACGATCGAAGACTTCAGACCAAGTACAACAACGCTACCTATGTTGTTCAGAGAGCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT