Sequence
atgc intronic sequence ATGC exonic sequence...gcacattacttaccaatttgcatgttatcacatttagaatcaggctgtatatatgtgtttctatttttatttagctccaaataatcttttgaacttttagGTTACATGGGATGAACCAGAGTTACTTCAAAATGTAAAAAGGGTGAGCCCGTGGCTGGTTGAAATTGTATCAAACATGCCTACCATTCATCTTTCCCATT
Basic information
species | Glycine max |
transcript | GLYMA19G36570.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G36570.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0040g01810.t01 (Vitis vinifera), 3'ss of exon 1
gcacattacttaccaatttgcatgttatcacatttagaatcaggctgtatatatgtgtttctatttttatttagctccaaataatcttttgaact--------tttagGTTACATGGGATGAACCAGAGTTACTTCAAAATGTAAAAAGGGTGAGCCCGTGGCTGGTTGAAATTGTATCAAACATGCCTACCATTCATCTTTCCCATT
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--acatttcctc----tttgagtttctacaaagttaatgatataatctctctgt-tccctcccctctcatct-gctcttaataatttgttgaagtaaatatgttgcagGTGACATGGGATGAACCAGATCTGCTTCAAAATGTGAAACGCGTCAGCCCATGGCTGGTAGAATTGGTATCCAATATGCCATCCATCCATCTGACCCATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23725790|gb|BU760860.1|BU760860EST: TTAACTTTGCTGATCCAAGATGGCCCAACTCTCCTTGGAGACTTCTCCAG GTTACATGGGATGAACCAGAGTTACTTCAAAATGTAAAAAGGGTGAGCCCG
genomic: TTAACTTTGCTGATCCAAGATGGCCCAACTCTCCTTGGAGACTTCTCCAGgtactgttta ... gaacttttagGTTACATGGGATGAACCAGAGTTACTTCAAAATGTAAAAAGGGTGAGCCCG
EST:
gi|14259948|gb|BG882856.1|BG882856EST: TTAACTTTGCTGATCCAAGATGGCCCAACTCTCCTTGGAGACTTCTCCAG GTTACATGGGATGAACCAGAGTTACTTCAAAATGTAAAAAGGGTGAGCCCG
genomic: TTAACTTTGCTGATCCAAGATGGCCCAACTCTCCTTGGAGACTTCTCCAGgtactgttta ... gaacttttagGTTACATGGGATGAACCAGAGTTACTTCAAAATGTAAAAAGGGTGAGCCCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtatatatgtgtttctatttttatttagctccaaataatcttttgaacttttagGTTACATGGGATGAACCAGAGTTACTTCAAAATGTAAAAAGGGTGAGCCCGTGGCTGGTTGAAATTGTATCAAACATGCCTACCATTCATCTTTCCCATT
tcttttg CT-rich tract
atatgtgtttctattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcacattacttaccaatttgcatgttatcacatttagaatcaggctgtatatatgtgtttctatttttatttagctccaaataatcttttgaacttttagGTTACATGGGATGAACCAGAGTTACTTCAAAATGTAAAAAGGGTGAGCCCGTGGCTGGTTGAAATTGTATCAAACATGCCTACCATTCATCTTTCCCATT
- - - - cttacca
- - - - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - - -aggctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccaaa