Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcccctccatctctcttttgctctttttgctgacacacacacacactcactcacaagtattaacttctctcatacgctttatttgccttttcgagatctgtgattaaaccttcacttgttttccttccttctgcagACGAGCTTCCCCTTGCGCCG

Basic information

species Glycine max
transcript GLYMA19G35710.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301012|gb|FG990112.1|FG990112
EST:     TTCTTCTCCTTTCCTTACCACAGAAGAATAGTAGCAATCAGAGACTGAAG                         ACGAGCTTCCCCTTGCGCCG
genomic: TTCTTCTCCTTTCCTTACCACAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: gi|10844730|gb|BF067948.1|BF067948
EST:     GAAGAATAGTAGCAATCAGAGACTGAAG                         ACGAGCTTCCCCTTGCGCCG
genomic: GAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: gi|193466642|gb|FK432077.1|FK432077
EST:     ACAGAAGAATAGTAGCAATCAGAGACTGAAG                         ACGAGCTTCCCCTTGCGCCG
genomic: ACAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: gi|208158107|gb|GD957832.1|GD957832
EST:     ACAGAAGTAATTAGTAGCAATCGGAGACTGAAG                         ACGAGCTTCCCCTTGCGCCG
genomic: ACAGAAG-AA-TAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: gi|208201125|gb|GD999576.1|GD999576
EST:     TCTTCTCCTTTCCTTACCACCAGAAGAATAGTAGCAATCAGAGACTGAAG                         ACGAGCTCCCCCTTGCGCCG
genomic: TCTTCTCCTTTCCTTACCA-CAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: gi|254335060|gb|GR844845.1|GR844845
EST:     TTCTTCTCCTTTCCTTACCACAGAAGAATAGTAGCAATCAGAGACTGAAG                         ACGAGCTTCCCCTTGCGCCG
genomic: TTCTTCTCCTTTCCTTACCACAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: gi|208098884|gb|GD892687.1|GD892687
EST:     TAGTAGCAATCTAGTAGTACTGAAG                         ACGAGCTTCCCCTTGCGCCG
genomic: TAGTAGCAATC-AG-AG-ACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: gi|193480869|gb|FK444308.1|FK444308
EST:     ACAGAAGAATAGTAGCAATCAGAGACTGAAG                         ACGAGCTTCCCCTTGCGCCG
genomic: ACAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: gi|208294947|gb|GE089502.1|GE089502
EST:     ACAGAAGAATAGTAGCAATCAGAGACTGAAG                         ACGAGCTTCCCCTTGCGCC-
genomic: ACAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: gi|151398751|gb|EV268622.1|EV268622
EST:     ACCACAGAAGAATAGTAGCAATCAGAGACTGAAG                         ACGAGCTTCCCCTTGCGCCG
genomic: ACCACAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: gi|298189455|gb|HO037858.1|HO037858
EST:     ACCACAGAAGAATAGTAGCAATCAGAGACTGAAG                         ACGAGCTTCCCCTTGCGCCG
genomic: ACCACAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: gi|8669991|gb|BE191098.1|BE191098
EST:     CAGAGACTGAAG                         ACGAGCTTCCCCTTGCGCCG
genomic: CAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: gi|17964359|gb|BM271095.1|BM271095
EST:     AGTAGCAATCAGAGACTGAAG                         ACGAGCTTCCCCTTGCGCCG
genomic: AGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: gi|120533838|gb|EH261971.1|EH261971
EST:     CAGAAGAATAGTAGCAATCAGAGACTGAAG                         ACGAGCTTCCCCTTGCGCCG
genomic: CAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: gi|298182727|gb|HO031462.1|HO031462
EST:     ACCACAGAAGAATAGTAGCAATCAGAGACTGAAG                         ACGAGCTTCCCCTTGCGCCG
genomic: ACCACAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgccttttcgagatctgtgattaaaccttcacttgttttccttccttctgcagACGAGCTTCCCCTTGCGCCG
                           ccttcacttgttttcc  CT-rich tract
                   tgattaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttttcccctccatctctcttttgctctttttgctgacacacacacacactcactcacaagtattaacttctctcatacgctttatttgccttttcgagatctgtgattaaaccttcacttgttttccttccttctgcagACGAGCTTCCCCTTGCGCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT