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...ttgttctaaatcacccctatctatgcataagatgcatcatgcctgtgctaacataacatattgatctgttttactaattaagcactaaaaaaaaacgcagGAGGAGCAAGTGGTATAGGCTTGGAGACAGCAAGAGTGTTGGCTCTTCGAAAGGTCCATGTGATCATTGCAGTTCGGAACATGGTGTCTGCAAAGGAGGC
species | Glycine max |
transcript | GLYMA19G35630.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAGGTTACTGATGGAATTGATGCCAGCAACCTCACTGCAATTATCACAG GAGGAGCAAGTGGTATACGCTTGGAGACAGCAAGAGTGTTGGCTCTTCGAAEST: gi|207821113|gb|GD792208.1|GD792208
genomic: ACAGGTTACTGATGGAATTGATGCCAGCAACCTCACTGCAATTATCACAGgtcagtttta ... aaaaacgcagGAGGAGCAAGTGGTATAGGCTTGGAGACAGCAAGAGTGTTGGCTCTTCGAA
EST: ACAGGTTACTGATGGAATTGATGCCAGCAACCTCACTGCAATTATCACAG GAGGAGCAAGTGGTATAGGCTTGGAGACAGCAAGAGTGTTEST: gi|14259045|gb|BG881953.1|BG881953
genomic: ACAGGTTACTGATGGAATTGATGCCAGCAACCTCACTGCAATTATCACAGgtcagtttta ... aaaaacgcagGAGGAGCAAGTGGTATAGGCTTGGAGACAGCAAGAGTGTT
EST: ACAGGTTACTGATGGAATTGATGCCAGCAACCTCACTGCAATTATCACAG GAGGAGCAAGTGGTATAGGCTTGGAGACAGCAAGAGTGTTGGCTCTTCGAAEST: gi|207782875|gb|GD751520.1|GD751520
genomic: ACAGGTTACTGATGGAATTGATGCCAGCAACCTCACTGCAATTATCACAGgtcagtttta ... aaaaacgcagGAGGAGCAAGTGGTATAGGCTTGGAGACAGCAAGAGTGTTGGCTCTTCGAA
EST: ACAGGTTACTGATGGAATTGATGCCAGCAACCTCACTGCAATTATCACAG GAGGAGCAAGTGGTATAGGCTTGGAGACAGCAAGAG
genomic: ACAGGTTACTGATGGAATTGATGCCAGCAACCTCACTGCAATTATCACAGgtcagtttta ... aaaaacgcagGAGGAGCAAGTGGTATAGGCTTGGAGACAGCAAGAG
tgctaacataacatattgatctgttttactaattaagcactaaaaaaaaacgcagGAGGAGCAAGTGGTATAGGCTTGGAGACAGCAAGAGTGTTGGCTCTTCGAAAGGTCCATGTGATCATTGCAGTTCGGAACATGGTGTCTGCAAAGGAGGC
ttttactaattaagca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttctaaatcacccctatctatgcataagatgcatcatgcctgtgctaacataacatattgatctgttttactaattaagcactaaaaaaaaacgcagGAGGAGCAAGTGGTATAGGCTTGGAGACAGCAAGAGTGTTGGCTCTTCGAAAGGTCCATGTGATCATTGCAGTTCGGAACATGGTGTCTGCAAAGGAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - tcacccc
- - - - - - - - - - - -tgcataa
- - - - - - - - - - - - - - - gatgcat
- - - - - - - - - - - - - - - - - - -catgcct
- - - - - - - - - - - - - - - - - - - - - - -tgctaac