Sequence
atgc intronic sequence ATGC exonic sequence...gaacactagtgctgctgtctaccatacatggatgtgcatcagtaaatagatgcttgaaatcaagtcacatattaaccaggactgtgttcatttgtttcagGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTACATGCAGCAGGACTGGGCC
Basic information
species | Glycine max |
transcript | GLYMA19G35140.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G35140.2 (Glycine max), 3'ss of exon 1
lower sequence: AT1G04080.2 (Arabidopsis thaliana), 3'ss of exon 1
---------------------------------gaacactagtgctgctgtctaccatacatggatgtgcatc-agtaaatagatgc-----ttgaaatcaagtcacatattaaccaggactgtgttcatttgtttcagGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTACATGCAGCAGGACTGGGCC
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gtaaatgcagtgtttggcagtatcatgcattcaaagagtgaatccttttctccatagaactcgtgtttgtctctattgattggatatgtctgtttctttcagctcatatgacattctttttactataatgctgttgcagGCTTTTTGAACGAGCTTTGGTTTACGTTGGAACTGATTTTCTTTCCTCTCCGTTGTGGGACAAATACATTGAGTATGAGTACATGCAGCAGGACTGGAGC
upper sequence: GLYMA19G35140.2 (Glycine max), 3'ss of exon 1
lower sequence: AT1G04080.3 (Arabidopsis thaliana), 3'ss of exon 4
gaacactagtgctgctgtctaccatacatggatgtgcatc-agtaaatagatgc-----ttgaaatcaagtcacatattaaccaggactgtgttcatttgtttcagGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTACATGCAGCAGGACTGGGCC
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------gaatccttttctccatagaactcgtgtttgtctctattgattggatatgtctgtttctttcagctcatatgacattctttttactataatgctgttgcagGCTTTTTGAACGAGCTTTGGTTTACGTTGGAACTGATTTTCTTTCCTCTCCGTTGTGGGACAAATACATTGAGTATGAGTACATGCAGCAGGACTGGAGC
upper sequence: GLYMA19G35140.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0005g04280.t01 (Vitis vinifera), 3'ss of exon 4
gaacactagtgctgctgtctaccatacatggatgtgcat-cagtaaatagatgcttgaaatcaagtcacatattaaccaggactgtgttcatt----tgtttcagGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTACATGCAGCAGGACTGGGCC
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--acattagttccgctgtctcgcattcatggatgttcttgcaacggctaaa---gtgatgttatgatgtgtgtcataatgatctctcctttttatggtgtttcagGCTGTTTGAACGGGGACTAGCTTATGTAGGAACAGATTACCTGTCATACCCCCTTTGGGATAAATTCATAGAATATGAGTATTCACAGCAGGAGTGGTCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|61241632|gb|DN591023.1|DN591023EST: TATTGCATATTTGCTATAAGCACATATGGGGATCCAAACACTGTTCGTAG GCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCC
genomic: TATTGCATATTTGCTATAAGCACATATGGGGATCCAAACACTGTTCGTAGgtaatggaag ... tttgtttcagGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atagatgcttgaaatcaagtcacatattaaccaggactgtgttcatttgtttcagGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTACATGCAGCAGGACTGGGCC
tattaac putative branch site (score: 1)
tttgtttc putative PPT
acatattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaacactagtgctgctgtctaccatacatggatgtgcatcagtaaatagatgcttgaaatcaagtcacatattaaccaggactgtgttcatttgtttcagGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTACATGCAGCAGGACTGGGCC
- - - - - -ctgctgt
- - - - - - - - - - -ccataca
- - - - - - - - - - - - - - -ggatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttc