1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttgtatgagtacttgagcttctttgccttgtcagcttttgatttttgatgttgtggtgtggcagtggaagtcatactaaaaaaggtgattcttttgcagTGGCAAGCATGGCAAGAGGAAGAGCAGATGTGAACTCCAGAAAAAAATTGGTCACAGCTGTGTTGGTTTTGGTGATTGTTGGTGGTTTTTTCTATTTCTA
species | Glycine max |
transcript | GLYMA19G34890.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTGCTCTTACTTACTCCTATGTTTTTCA TGGCAAGCATGGCAAGAGGAAGAGCAGATGTGAACTCCAGNNNNNNNTTGG
genomic: TTTGCTCTTACTTACTCCTATGTTTTTCAgtgagtgaga ... tcttttgcagTGGCAAGCATGGCAAGAGGAAGAGCAGATGTGAACTCCAGAAAAAAATTGG
ttgatgttgtggtgtggcagtggaagtcatactaaaaaaggtgattcttttgcagTGGCAAGCATGGCAAGAGGAAGAGCAGATGTGAACTCCAGAAAAAAATTGGTCACAGCTGTGTTGGTTTTGGTGATTGTTGGTGGTTTTTTCTATTTCTA
tactaaa putative branch site (score: 1)
ttcttttgc putative PPT
atactaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtatgagtacttgagcttctttgccttgtcagcttttgatttttgatgttgtggtgtggcagtggaagtcatactaaaaaaggtgattcttttgcagTGGCAAGCATGGCAAGAGGAAGAGCAGATGTGAACTCCAGAAAAAAATTGGTCACAGCTGTGTTGGTTTTGGTGATTGTTGGTGGTTTTTTCTATTTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- tgtatga
- - - - -gtacttg
- - - - - - - - - - -ctttgcc
- - - - - - - - - - - - - - - - - gcttttg
- - - - - - - - - - - - - - - - - - - - - - - -gatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa