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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcttgtaatccttatatgattctgaacaatttgccaatggaatttcttctgctacaacattcccttcaatttcgcttcacacagAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCACTGTCCATTGCGCGGCCTAGCAAGTTCGTGCAGCTGTCACTTGCTCGAAC

Basic information

species Glycine max
transcript GLYMA19G34390.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208150073|gb|GD951661.1|GD951661
EST:     CTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGGCAG                         AACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCAC
genomic: CTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAGgtctgcttgt ... cttcacacagAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCAC
EST: gi|192331130|gb|FK020350.1|FK020350
EST:     CTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAG                         AACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCAC
genomic: CTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAGgtctgcttgt ... cttcacacagAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCAC
EST: gi|298178727|gb|HO024462.1|HO024462
EST:     CTCTTCAACGACGGCAAGAGGATACTGGAACCAGACACGTGGTTCGACAG                         AACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCAC
genomic: CTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAGgtctgcttgt ... cttcacacagAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCAC
EST: gi|298176546|gb|HO023133.1|HO023133
EST:     CTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAG                         AACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCAC
genomic: CTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAGgtctgcttgt ... cttcacacagAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCAC
EST: gi|298164301|gb|HO013946.1|HO013946
EST:     CTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAG                         AACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCAC
genomic: CTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAGgtctgcttgt ... cttcacacagAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCAC
EST: gi|192325118|gb|FK019064.1|FK019064
EST:     CTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAG                         AACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCAC
genomic: CTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAGgtctgcttgt ... cttcacacagAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCAC
EST: gi|298163850|gb|HO012583.1|HO012583
EST:     CTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAG                         AACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCAC
genomic: CTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAGgtctgcttgt ... cttcacacagAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgccaatggaatttcttctgctacaacattcccttcaatttcgcttcacacagAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCACTGTCCATTGCGCGGCCTAGCAAGTTCGTGCAGCTGTCACTTGCTCGAAC
                                        tttcgcttc  CT-rich tract
           aatttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctgcttgtaatccttatatgattctgaacaatttgccaatggaatttcttctgctacaacattcccttcaatttcgcttcacacagAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCACTGTCCATTGCGCGGCCTAGCAAGTTCGTGCAGCTGTCACTTGCTCGAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG