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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaaatctgttttaatttgttggttagttttagatggtaaagcttttaatttgatgggtgtttgtccaaaattgacaacatttgtttatttcgttttggtaatgtgaacttgctgttttgtattatacttgaattgattcatttgctatttttcttttgggggtcccaaaatttgattgaattggtgatatagGTTGGATGCGCATCGAATGCTGCAATTGTTGAGAGGGAAACGACTGGTTTTCGTTGGCGATTCGCTCAATAGGAACATGTGGGAGTCATTGATTTGCATA

Basic information

species Glycine max
transcript GLYMA19G33110.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G33110.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os06g10560.1 (Oryza sativa), 3'ss of exon 1
gtatgcaaatctgttttaatttgttggttagttttagatggtaaagcttttaatttgatgggtgtttgtccaaaattgacaacatttgtttatttcgttttggtaatgtgaacttgctgtttt--gtattatacttgaattgattcatttgctatttttcttttgggggtcccaaaatttgattgaattggtgatatagGTTGGATGCGCATCGAATGCTGCAATTGTTGAGAGGGAAACGACTGGTTTTCGTTGGCGATTCGCTCAATAGGAACATGTGGGAGTCATTGATTTGCATA
                                                                                                      || | |  || || ||       | | |  | ||   |  |||  | | | || ||  |        | || || | |  |    ||| |    ||| ||| || |   |   ||| || |   | |||| |||||| |||||||||||||||| ||||| || ||||||||||||||||| ||  || | ||||| 
------------------------------------------------------------------------------------------------------gtgaggaaaagttactagagcaggcaatcaattttggtgaatttttattccatcttagtgcataacatgcctaattatattc---ttgttatattagATTGAATCCAACTGATATGTTGGAGAGGCTGAGGGGGAAAAGACTGGTTTTCGTTGGTGATTCACTTAATAGGAACATGTGGGAATCCCTGGTCTGCATC

upper sequence: GLYMA19G33110.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G033805_T01 (Zea mays), 3'ss of exon 1
gtatgcaaatctgttttaatttgttggttagttttagatggtaaagcttttaatttgatgggtgtttgtccaaaattgacaacatttgtttatttcgttttggtaatgtgaacttgctgttttgtattatacttgaattgattcatttgctatttttcttttgggggtcccaaaatttgattgaattggtgatatagGTTGGATGCGCATCGAATGCTGCAATTGTTGAGAGGGAAACGACTGGTTTTCGTTGGCGATTCGCTCAATAGGAACATGTGGGAGTCATTGATTTGCATA
                                                                                                ||   | ||| || |   ||      || | |    || ||||  ||||||| | || ||  |||      |  |||  |    ||    ||    |  || ||| |  |       ||| || |   | ||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||| ||  |  | || || 
------------------------------------------------------------------------------------------------gtgaggataaggtta--ctggaacaatgcaatg-gttttaattatttcattt-caatcttggtttgtaatttgtcaagttcatgtttg--tgtcatttcagATTGAACCCAACCGATATGTTGGAGAGGCTGAGAGGAAAAAGACTGGTGTTCGTTGGTGATTCGCTCAATAGGAACATGTGGGAATCCCTTGTGTGTATT

upper sequence: GLYMA19G33110.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G12060.1 (Arabidopsis thaliana), 3'ss of exon 1
gtatgcaaatctgttttaatttgttggttagttttagatggtaaagcttttaatttgatgggtgtttgtccaaaattgacaacatttgtttatttcgttttggtaatgtgaacttgctgttttgtattatacttgaattgattcatttgctatttttct--tttgggggtcccaaaatttgattgaattggtgatatagGTTGGATGCGCATCGAATGCTGCAATTGTTGAGAGGGAAACGACTGGTTTTCGTTGGCGATTCGCTCAATAGGAACATGTGGGAGTCATTGATTTGCATA
                                                                                                ||  |  |||       || || |||| ||          | ||| |  |  |  | | |  |  |     | |   |   | ||  |||||   ||| |  ||||  |||    |  | ||||  |  || | ||||| | | | || || || ||||| |||||||| ||||| |||||||||||||| ||| ||||||| 
------------------------------------------------------------------------------------------------gtaattataacacttggtttcttttttttacatggtggtgagtgactggtacgtgagtctaataatccaatgatataagtgtgtgtatgaatatatgaaa--gGTTAAATGGAGGTAAATTGCTTGAGATGATTAGAGGAAGAAGGCTAGTGTTTGTTGGAGATTCGCTGAATAGAAACATGTGGGAGTCTTTGGTTTGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttgctatttttcttttgggggtcccaaaatttgattgaattggtgatatagGTTGGATGCGCATCGAATGCTGCAATTGTTGAGAGGGAAACGACTGGTTTTCGTTGGCGATTCGCTCAATAGGAACATGTGGGAGTCATTGATTTGCATA
                                atttgat  putative branch site (score: 5)
                             aaaatttgattgaatt  TA-rich tract