1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatcgccacgttctctcttccctctttcatccccccgataagaacaagcacccaccgtttaacgctaatttttgagtgtttttgttttttgcagCAACAAACAAACATCTTTTACCTTAAACAACAATGGCCGATGCCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAG
species | Glycine max |
transcript | GLYMA19G32990.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCATACACACGTTGTCGCGCACACATTCCTTCATTCCGCAG CAACAAACAAACATCTTTTACCTTAAACAACAATGGCCGATGCCGAGGATAEST: gi|192329006|gb|FK019705.1|FK019705
genomic: TCTCATACACACGTTGTCGCGCACACATTCCTTCATTCCGCAGgtatcgccac ... ttttttgcagCAACAAACAAACATCTTTTACCTTAAACAACAATGGCCGATGCCGAGGATA
EST: TCTCATACACACGTTGTCGCGCACACATTCCTTCATTCCGCAG CAACAAACAAACATCTTTTACCTTAAACAACAATGGCCGATGCCGAGGATAEST: gi|193312823|gb|FK282320.1|FK282320
genomic: TCTCATACACACGTTGTCGCGCACACATTCCTTCATTCCGCAGgtatcgccac ... ttttttgcagCAACAAACAAACATCTTTTACCTTAAACAACAATGGCCGATGCCGAGGATA
EST: TTGTCGCGCACACATTCCTTCATTCCGCAG CAACAAACAAACATCTTTTACCTTAAACAACAATGGCCGATGCCGAGGATAEST: gi|193421389|gb|FK389590.1|FK389590
genomic: TTGTCGCGCACACATTCCTTCATTCCGCAGgtatcgccac ... ttttttgcagCAACAAACAAACATCTTTTACCTTAAACAACAATGGCCGATGCCGAGGATA
EST: CACATTCCTTCATTCCGCAG CAACAAACAAACATCTTTTACCTTAAACAACAATGGCCGATGCCGAGGATAEST: gi|193663559|gb|FK604585.1|FK604585
genomic: CACATTCCTTCATTCCGCAGgtatcgccac ... ttttttgcagCAACAAACAAACATCTTTTACCTTAAACAACAATGGCCGATGCCGAGGATA
EST: TTCCTTCATTCCGCAG CAACAAACAAACATCTTTTACCTTAAACAACAATGGCCGATGCCGAGGATAEST: gi|193310736|gb|FK274632.1|FK274632
genomic: TTCCTTCATTCCGCAGgtatcgccac ... ttttttgcagCAACAAACAAACATCTTTTACCTTAAACAACAATGGCCGATGCCGAGGATA
EST: ACACATTCCTTCATTCCGCAG CAACAAACAAACATCTTTTACCTTAAACAACAATGGCCGATTGTCCGAGGA
genomic: ACACATTCCTTCATTCCGCAGgtatcgccac ... ttttttgcagCAACAAACAAACATCTTTTACCTTAAACAACAATGGCCGA-TG-CCGAGGA
aagaacaagcacccaccgtttaacgctaatttttgagtgtttttgttttttgcagCAACAAACAAACATCTTTTACCTTAAACAACAATGGCCGATGCCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAG
cgctaat putative branch site (score: 3)
tgtttttgtttttt putative PPT
tgtttttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcgccacgttctctcttccctctttcatccccccgataagaacaagcacccaccgtttaacgctaatttttgagtgtttttgttttttgcagCAACAAACAAACATCTTTTACCTTAAACAACAATGGCCGATGCCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT