1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tggaggacttgtttttaatttcattaattctgaggactaaaaggatggtgtgtgacaaatttgaggactaaattgtctatttactcaatttattttccagGAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAATAGAG
species | Glycine max |
transcript | GLYMA19G30460.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG GAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAAEST: gi|193466669|gb|FK432090.1|FK432090
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAA
EST: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG GAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAATEST: gi|193371747|gb|FK336000.1|FK336000
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAAT
EST: ATGCAACTGCAAGGCAAATTCCTAACACTTT-CTTGGAGTATTCGTTGAG GAGATTAATCAEST: gi|208241351|gb|GE038767.1|GE038767
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCA
EST: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG GAGATTAATCATGCTGGCGC-GGGGGACGTGTGGGCTGAACTTGTTATCEST: gi|193572995|gb|FK528738.1|FK528738
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGCAGGGGGAC-TGTGGGCTGAACTTGTTATC
EST: TGCAACTGCAAGGCAAATTCCTAACACTTTTTCTTGGAGTATTCGTTGAG GAGATTAATCATGCTGGCGCGAGGGG-ACTGTGGGCTGAACTTGTTATCAAEST: gi|208078390|gb|GD874438.1|GD874438
genomic: TGCAACTGCAAGGCAAATTCCTAACACTTTT-CTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGC-AGGGGGACTGTGGGCTGAACTTGTTATCAA
EST: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG GAGATTAATCATGCTGGCGCEST: gi|208257793|gb|GE051468.1|GE051468
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGC
EST: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG GAGATTAATCATGCTGGCGCAGGGGGEST: gi|213591414|gb|DB955734.1|DB955734
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGCAGGGGG
EST: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG GAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAATEST: gi|193491629|gb|FK454249.1|FK454249
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAAT
EST: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG GAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAATEST: gi|193459893|gb|FK425220.1|FK425220
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAAT
EST: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG GAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTEST: gi|213617613|gb|DB969325.1|DB969325
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTT
EST: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG GAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAAT
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAAT
tggtgtgtgacaaatttgaggactaaattgtctatttactcaatttattttccagGAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAATAGAG
gactaaa putative branch site (score: 2)
tttattttcc putative PPT
taaattgtctatttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaggacttgtttttaatttcattaattctgaggactaaaaggatggtgtgtgacaaatttgaggactaaattgtctatttactcaatttattttccagGAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAATAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
tggagga
- - - - - - - - - - - - - -ttctgag
- - - - - - - - - - - - - - - - - - - - - - -tggtgtg