1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctcaatgcactgagcactcagcctttggtgttcattcatgttaaatttggttattgtttctacttcaaagtgttcattcatatcttctgtgtgcttatagGTTGCTTGGACCCATTGAACTTTAAGGTGTTCAAACTTGTTAAGCGTGCACAGCTGAGCCATAATGTTGCTAAGTTCACATTTGCACTTCCAACACCTAC
species | Glycine max |
transcript | GLYMA19G29720.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAGCGCAAAG GTTTCTTGGACCCATTGAACTTTAAGGTGTTCAAACTTGTTAAGCGTGCACEST: gi|298167651|gb|HO012914.1|HO012914
genomic: GAAGCGCAAAGgtatgacctt ... gtgcttatagGTTGCTTGGACCCATTGAACTTTAAGGTGTTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCTGTCTATCTCTATTCATCTAAGAAGCGCAAAG GTTGCTTGGACCCATTGAACTTTAAGGTGTTCAAACTTGTTAAGCGTGCACEST: gi|33389849|gb|CA853056.1|CA853056
genomic: AGCCATTGGGCTTGGTGCTGTCTATCTCTATTCATCTAAGAAGCGCAAAGgtatgacctt ... gtgcttatagGTTGCTTGGACCCATTGAACTTTAAGGTGTTCAAACTTGTTAAGCGTGCAC
EST: GCCATTGGGCTTGGTGCTTGTCTATCTCAATTCATCTAAGAAGCGCAAAG GTTGCTTGGACCCATTGAACTTTAAGGTGTTCAAACTTGTTAAGCGTGCACEST: gi|208248828|gb|GE049519.1|GE049519
genomic: GCCATTGGGCTTGGTGC-TGTCTATCTCTATTCATCTAAGAAGCGCAAAGgtatgacctt ... gtgcttatagGTTGCTTGGACCCATTGAACTTTAAGGTGTTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCTGTCTATCTCTATTCATCTAAGAAGCGCAAAG GTTGCTTGGACCCATTGAACTTTAAGGTGTTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCTGTCTATCTCTATTCATCTAAGAAGCGCAAAGgtatgacctt ... gtgcttatagGTTGCTTGGACCCATTGAACTTTAAGGTGTTCAAACTTGTTAAGCGTGCAC
tttggttattgtttctacttcaaagtgttcattcatatcttctgtgtgcttatagGTTGCTTGGACCCATTGAACTTTAAGGTGTTCAAACTTGTTAAGCGTGCACAGCTGAGCCATAATGTTGCTAAGTTCACATTTGCACTTCCAACACCTAC
ttattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcaatgcactgagcactcagcctttggtgttcattcatgttaaatttggttattgtttctacttcaaagtgttcattcatatcttctgtgtgcttatagGTTGCTTGGACCCATTGAACTTTAAGGTGTTCAAACTTGTTAAGCGTGCACAGCTGAGCCATAATGTTGCTAAGTTCACATTTGCACTTCCAACACCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- -aatgcac
- - - - - - -gcactca
- - - - - - - - - - gcctttg
- - - - - - - - - - - - - - - - cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttctg