Sequence
atgc intronic sequence ATGC exonic sequence...attagtggaattgatgttataagatgccgaatagtaatattcactaactagtgctttatctctttgaatccattaattctgaaacttgtgttgtttttagGATGGAGAGTCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCCGCGGCAAGCATTCTTCTTCAGCATGGTGCCTCTATTACACTGG
Basic information
species | Glycine max |
transcript | GLYMA19G29100.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G29100.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0032g00280.t01 (Vitis vinifera), 3'ss of exon 3
attagtggaattgatgt-tataagatgccgaata-gtaatattcactaactag---tgctttatctctttgaatccattaattctgaaacttgtgttgtttttagGATGGAGAGTCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCCGCGGCAAGCATTCTTCTTCAGCATGGTGCCTCTATTACACTGG
|||| || | | | | || | | ||| || || | || || | ||||| || | | ||| | | | || || | |||||||||| || ||||||||||||||||| |||||||||||||||||||| ||||| | |||||| |||||||||||| |||||| ||||||||| | |
--tagtagattctgcatatgcaggaagacttatatgtgggctttataaagcaggaatactttaattcctcttctacatgatccttctcattttctgtg---tcagGATGGAGAATCGGGATGGAGTAGCCTTCATAGGGCTCTGCATTTTGGTCACCTTGCTGTGGCAAGTATTCTTCTTCAGTCTGGTGCATCTATTACATTAG
upper sequence: GLYMA19G29100.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ15078 (Selaginella moellendorffii), 3'ss of exon 1
attagtggaattgatgttataagatgccgaatagtaatattcactaactagtgctttatctctttgaatccattaattctgaaacttgtgttgtttttagGATGGAGAGTCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCCGCGGCAAGCATTCTTCTTCAGCATGGTGCCTCTATTACACTGG
||| || || | | ||| | || || | | | | | | | |||||||||||||| || || ||| | ||| | ||||||||||| ||||||||||| ||||||| || | ||| || | ||| || ||| | | |||
---------------------------------gta-cgttattgaagttctttttttgcctttcgatttctcacttcttctcatgttcgcaaattttagGATGGAGAATCCGGCTGGGGAAGCTTGCACAGGGCTCTACATTTTGGTCACCTTGCCGTTGCCGGTGCGCTTGTTGACGGTGGCGCTTCTGTGTCCTTGG
upper sequence: GLYMA19G29100.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ37614 (Selaginella moellendorffii), 3'ss of exon 1
attagtggaattgatgttataagatgccgaatagtaatattcactaactagtgctttatctctttgaatccattaattctgaaacttgtgttgtttttagGATGGAGAGTCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCCGCGGCAAGCATTCTTCTTCAGCATGGTGCCTCTATTACACTGG
||| || || | | |||| | ||||| | | | | | | | |||||||||||||| || || ||| | ||| | ||||||||||| ||||||||||| ||||||| || | ||| || | ||| || ||| | | |||
---------------------------------gta-cgttattcaagttcttcttttgccttttgatttctcacttcttctcatgttcgcaaattttagGATGGAGAATCCGGCTGGGGAAGCTTGCACAGGGCTCTACATTTTGGTCACCTTGCCGTTGCCGGTGCGCTTGTTGACGGTGGCGCTTCTGTGTCCTTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactagtgctttatctctttgaatccattaattctgaaacttgtgttgtttttagGATGGAGAGTCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCCGCGGCAAGCATTCTTCTTCAGCATGGTGCCTCTATTACACTGG
ttgttttt CT-rich tract
attaattct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attagtggaattgatgttataagatgccgaatagtaatattcactaactagtgctttatctctttgaatccattaattctgaaacttgtgttgtttttagGATGGAGAGTCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCCGCGGCAAGCATTCTTCTTCAGCATGGTGCCTCTATTACACTGG
- - - - - -tgatgtt
- - - - - - - - - - - gatgccg
- - - - - - - - - - - - - - - - - - - - -cactaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acttgtg