Sequence
atgc intronic sequence ATGC exonic sequencegtaagaatctgttctttgataactattttattgaatgtttttcggtatatgagctcaatacagatgggagcaactggatacatagttacttttgaactaccttttatgacagACTATACCCAATCCAGTATATCTCTTCCAAGGAATTGTACTACGCCGTGGTGCCAAAGGAACAGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTG
Basic information
species | Glycine max |
transcript | GLYMA19G27540.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G27540.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G08660.1 (Arabidopsis thaliana), 3'ss of exon 8
-----------------------------------------------------gtaagaatctgttctttgataactattttattgaatgtttttcggta-tatgagctcaatacagatgggagcaactggatacatagtt-----acttttgaactacctt---------ttatgacagACTATACCCAATCCAGTATATCTCTTCCAAGGAATTGTACTACGCCGTGGTGCCAAAGGAACAGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTG
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gtatgattaccgttttctttctttcttttttctacatcattacttgttttgtttttacaacttccactgtggtcgtttatccataacataattgaagagactgaaatctgaatccttgcggtcgcttttacatggattttatcccaattcttacacgactttgaatttatcttgtaacagCGTATACCAAACCCTGTTTATCTTTTCCAAGGAATTGTCCTACGCAGAGGTGCCAAAGGAACCGGGATGAAATCCATTGAACTAGCATTGTCCATGTGCG
upper sequence: GLYMA19G27540.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0068g01150.t01 (Vitis vinifera), 3'ss of exon 8
gtaagaatctgttctttgataactattttattgaatgtttttcggtatatgagctcaatacagatgggagcaactggatacatagttacttttgaactaccttttatgacagACTATACCCAATCCAGTATATCTCTTCCAAGGAATTGTACTACGCCGTGGTGCCAAAGGAACAGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTG
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---------cattctcttttcatt--ctgcttggatttttatgtcttaattgaaacagtaatccttcttgcaatggcatg-attttgatgatttttttttcacttatttcagAGTATTCAAAATCCAGTTTATCTTTTCCAAGGTATTGTGCTTCGCAGAGGTGCCAAAGGAACTGGAATGAAATCTATAGAACTAGCACTTTCCATGTGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atacagatgggagcaactggatacatagttacttttgaactaccttttatgacagACTATACCCAATCCAGTATATCTCTTCCAAGGAATTGTACTACGCCGTGGTGCCAAAGGAACAGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTG
ctacctttt CT-rich tract
ttactttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagaatctgttctttgataactattttattgaatgtttttcggtatatgagctcaatacagatgggagcaactggatacatagttacttttgaactaccttttatgacagACTATACCCAATCCAGTATATCTCTTCCAAGGAATTGTACTACGCCGTGGTGCCAAAGGAACAGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA