1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtactttagaggagtcaaatcctaatgttaatttctagcgcatggcattggaattggggttgttactaggatttgtgtttgaattggttattgatttcagATTGACCCTGCTAAGTACAAGAGCATCTCGTCTGGTTTTGGAGTTTTGCTTAAGGAGCAGGGATTCAGGGGCTTTTTTCGTGGCTGGGTGCCTACCTTGC
species | Glycine max |
transcript | GLYMA19G27380.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCACTCACATGACCGTCACTCCTCTTGACCTAGTCAAGTGTAATATGCAG ATTGACCCTGCTAAGTACAAGAGCATCTCGTCTGGTTTTGGAGTTTTGCTTEST: gi|207730712|gb|GD707865.1|GD707865
genomic: TCACTCACATGACCGTCACTCCTCTTGACCTAGTCAAGTGTAATATGCAGgtcctctctc ... ttgatttcagATTGACCCTGCTAAGTACAAGAGCATCTCGTCTGGTTTTGGAGTTTTGCTT
EST: TCACTCACATGACCGTCACTCCTCTTGACCTAGTCAAGTGTAATATGCAG ATTGACCCTGCTAAGTACAAGAGCATCTCGTCTGGTTTTGGAGTTTTGCTT
genomic: TCACTCACATGACCGTCACTCCTCTTGACCTAGTCAAGTGTAATATGCAGgtcctctctc ... ttgatttcagATTGACCCTGCTAAGTACAAGAGCATCTCGTCTGGTTTTGGAGTTTTGCTT
cattggaattggggttgttactaggatttgtgtttgaattggttattgatttcagATTGACCCTGCTAAGTACAAGAGCATCTCGTCTGGTTTTGGAGTTTTGCTTAAGGAGCAGGGATTCAGGGGCTTTTTTCGTGGCTGGGTGCCTACCTTGC
tattgat putative branch site (score: 3)
ttattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttagaggagtcaaatcctaatgttaatttctagcgcatggcattggaattggggttgttactaggatttgtgtttgaattggttattgatttcagATTGACCCTGCTAAGTACAAGAGCATCTCGTCTGGTTTTGGAGTTTTGCTTAAGGAGCAGGGATTCAGGGGCTTTTTTCGTGGCTGGGTGCCTACCTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - -caaatcc
- - - - - - - - - - - - - - - - - - - -gcatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtttg