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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttgatgattctattctgctgattgagaatggcgtgtaggatgttcggtatgtgttcttgactctcgatgttgattgtgtttaattgttttgaaatgtagGTTCCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTTGAGGATCACAAAGGCCAATGGCTAAGTTGCTTTCCTGATAACTGCACATCACTTGTTTCTCTT

Basic information

species Glycine max
transcript GLYMA19G27280.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27280.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0068g01330.t01 (Vitis vinifera), 3'ss of exon 2
-gttgatgattctattctgctgattgaga-atggcgtgtaggatgttcggtatgtgttcttgactctcgatgttgattgtgtttaattgttttgaaatgtagGTTCCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTTGAGGATCACAAAGGCCAATGGCTAAGTTGCTTTCCTGATAACTGCACATCACTTGTTTCTCTT
 |   |      |  |  |    | |  | ||   | |   ||  |   |    |   | |   | |  ||||    |   |||  ||  | |  ||| |||||| ||||| ||||| ||  |||||||||||||||||||||||| ||||||||||||||| || ||||| ||||| | |||||||||||| || ||  | 
tgaaaagaggggtgcttggacagtgggaatattatgggctagaaatgttgggctttggcatagatattaatgtatgcttcattttgtttctct--aatctagGTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGGCCAATGGCTTAGCTGCTTCCCTGACAGCTGCACATCACTAGTCTCCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205753|gb|BU965006.1|BU965006
EST:     TGTGAAGGGTTCTCTACCGATGGCCTTGCTGCTATAGCTGCAAATTGCAG                         GTTCCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTTGAGGATC
genomic: TGTGAAGGGTTCTCTACCGATGGCCTTGCTGCTATAGCTGCAAATTGCAGgtgagaatga ... tgaaatgtagGTTCCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTTGAGGATC
EST: gi|5666784|gb|AI930820.1|AI930820
EST:     TGTGAAGGGTTCTCTACCGATGGCCTTGCTGCTATAGCTGCAAATTGCAG                         GTTCCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTTGAGGATCACAAAGG
genomic: TGTGAAGGGTTCTCTACCGATGGCCTTGCTGCTATAGCTGCAAATTGCAGgtgagaatga ... tgaaatgtagGTTCCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTTGAGGATCACAAAGG
EST: gi|18040367|gb|BM308661.1|BM308661
EST:     TGTGAAGGGTTCTCTACCGATGGCCTTGCTGCTATAGCTGCAAATTGCAG                         GTTCCTTANGGAGCTGGATCTGCAAGAAAATGAAGTTGAGGATCACAAAGG
genomic: TGTGAAGGGTTCTCTACCGATGGCCTTGCTGCTATAGCTGCAAATTGCAGgtgagaatga ... tgaaatgtagGTTCCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTTGAGGATCACAAAGG
EST: gi|254338799|gb|GR847516.1|GR847516
EST:     GGTTCTCTACCGATGGCCTTGCTGCTATAGCTGCAAATTGCAG                         GTTCCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTTGAGGATCACAAAGG
genomic: GGTTCTCTACCGATGGCCTTGCTGCTATAGCTGCAAATTGCAGgtgagaatga ... tgaaatgtagGTTCCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTTGAGGATCACAAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggtatgtgttcttgactctcgatgttgattgtgtttaattgttttgaaatgtagGTTCCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTTGAGGATCACAAAGGCCAATGGCTAAGTTGCTTTCCTGATAACTGCACATCACTTGTTTCTCTT
                                       ttgtttt  CT-rich tract
                                  tttaattgttttgaaa  TA-rich tract