1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttaggattttctgtttttaaaaaaataaaatcttattgtatggtatctatttttattttgcgaattttttacttatgcattttcttgtgtttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC
species | Glycine max |
transcript | GLYMA19G27250.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTACAACCAAGGAACCTC GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTTEST: gi|15815757|gb|BI788032.1|BI788032
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTACAACCAAGGAACCTCgtacgttccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTACAACCAACGAACCTC GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTTEST: gi|7285467|gb|AW597954.1|AW597954
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTACAACCAAGGAACCTCgtacgttccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTACAACCAAGGAACCTC GACGGCCTATGATGTAAGCTEST: gi|23064074|gb|BU578847.1|BU578847
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTACAACCAAGGAACCTCgtacgttccg ... ttttttaaagGACGGCCTATGATGTAAGCT
EST: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTACAACCAAGGAACCTC GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTTEST: gi|207794125|gb|GD765345.1|GD765345
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTACAACCAAGGAACCTCgtacgttccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTACAACCAAGGAACCTC GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGEST: gi|13791278|gb|BG653869.1|BG653869
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTACAACCAAGGAACCTCgtacgttccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGG
EST: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTACAACCAAGGAACCTC GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTACAACCAAGGAACCTCgtacgttccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
tctatttttattttgcgaattttttacttatgcattttcttgtgtttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC
ttttcttgtgtttttt CT-rich tract
ttttattttgcgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaggattttctgtttttaaaaaaataaaatcttattgtatggtatctatttttattttgcgaattttttacttatgcattttcttgtgtttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC
- - - - ttctgtt
- - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttgtg