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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagtttctatccatttatgactatgagggtgcttattcattgcttttatcattttcttgcagAAATTTTTTCTTCAAGGAAGGTTCATATTTGGACCAGATGTGAGATCACTGGCGCTGACAATTATTCTTATTGTTGCTCCTGTTGCAGTTTTCTGTGTCT

Basic information

species Glycine max
transcript GLYMA19G27160.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27160.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM5G868588_T01 (Zea mays), 3'ss of exon 1
------------------------------------gtacagtttctatccatt-tatgactatgagggtgcttattcattgcttttatcattttcttgcagAAATTTTTTCTTCAAGGAAGGTTCATATTTGGACCAGATGTGAGATCACTGGCGCTGACAATTATTCTTATTGTTGCTCCTGTTGCAGTTTTCTGTGTCT
                                      || |  |||  ||||| | | |||||     |||  ||| |    |  |   ||| | || ||| | |||||  | |||||  |||||||||||||||| |||||||||||| ||   || || ||  | || ||| |||| ||  | |  || |||||| | |
tccctttcttagactccactcatgtgggagcctccgacactggatctgcccattgtttcactattgcaatgcc-atttaagtttgctgatattctttt-cagGAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCATTGTTTCTCACCATATTCCTCATTCTTGCGCCAATGGTGGTCTTCTGTATAT

upper sequence: GLYMA19G27160.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G26935.1 (Arabidopsis thaliana), 3'ss of exon 1
---------------------------------------gtacagtttctatcc--atttatgactatgagggtgcttattcattgcttttatcattttcttgcagAAATTTTTTCTTCAAGGAAGGTTCATATTTGGACCAGATGTGAGATCACTGGCGCTGACAATTATTCTTATTGTTGCTCCTGTTGCAGTTTTCTGTGTCT
                                       | | | ||| |   |  |  | |  |||   || || |||||  | || |||     | | ||||||| ||| |||||||| ||||||||  ||||||| |||||||| ||||||||||||||||| |||  ||| |||| ||  |||||| || |||||||  |||
gctggtgtattgttttcctggatgattcttgtttttggggaatactttgttctcgaaagtttctctaccgggctgtttattt-tcgcgttt-----tattttgcagATATTCTTTCTTCAGGGAAGGTTTGTATTTGGGCCAGATGTTAGATCACTGGCGCTGACCATTTGTCTCATTGCTGTCCCTGTTACAATTTTCTGCATCT

upper sequence: GLYMA19G27160.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G41060.1 (Arabidopsis thaliana), 3'ss of exon 1
----------------------------------gtacagtttctatccatttatgactatgagggtg-cttattcattgcttttatcattttcttgcagAAATTTTTTCTTCAAGGAAGGTTCATATTTGGACCAGATGTGAGATCACTGGCGCTGACAATTATTCTTATTGTTGCTCCTGTTGCAGTTTTCTGTGTCT
                                  ||    |   ||     || |  | |    | |  | ||||   |   ||| ||   ||  |||||| ||||| ||||||||||||||| || || || || ||||| |||||||| |  ||||| || | ||||||||| || |||||| || |||||||  |||
ttagtagtaacctagtggaattaaacattttgaggtttgttccttaaatccttctacccaaagtgttaacatattttctaaatttgtcccatttctgcagATATTTTGTCTTCAAGGAAGGTTTATCTTCGGGCCGGATGTAAGATCACTTGGTCTGACCATAAGTCTTATTGTGGCACCTGTTACAATTTTCTGCATCT

upper sequence: GLYMA19G27160.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G41060.2 (Arabidopsis thaliana), 3'ss of exon 1
-----------------------------------------------------------------------------------------gtacagtttctatccatttatgactatgagggtg-cttattcattgcttttatcattttcttgcagAAATTTTTTCTTCAAGGAAGGTTCATATTTGGACCAGATGTGAGATCACTGGCGCTGACAATTATTCTTATTGTTGCTCCTGTTGCAGTTTTCTGTGTCT
                                                                                         ||    |   ||     || |  | |    | |  | ||||   |   ||| ||   ||  |||||| ||||| ||||||||||||||| || || || || ||||| |||||||| |  ||||| || | ||||||||| || |||||| || |||||||  |||
gttatatagttgatgctgtctgtatattgctttcaatgtcgaatttaaatctggtttagtagtaacctagtggaattaaacattttgaggtttgttccttaaatccttctacccaaagtgttaacatattttctaaatttgtcccatttctgcagATATTTTGTCTTCAAGGAAGGTTTATCTTCGGGCCGGATGTAAGATCACTTGGTCTGACCATAAGTCTTATTGTGGCACCTGTTACAATTTTCTGCATCT

upper sequence: GLYMA19G27160.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0068g01530.t01 (Vitis vinifera), 3'ss of exon 1
-----------------------------------gtacagtttctatccatttatgactatgag-ggtgcttattcattgcttttatcattttcttgcagAAATTTTTTCTTCAAGGAAGGTTCATATTTGGACCAGATGTGAGATCACTGGCGCTGACAATTATTCTTATTGTTGCTCCTGTTGCAGTTTTCTGTGTCT
                                     | | |   | |   |||||  | |||   ||  | |   |||   ||| || | ||   |||||| |||||||||||| || ||| | ||||||||||| ||||| ||||| |||| |||||| ||  | |||||||||||||||||| | |||||||||||||
ttagacatttaaggtttgaattcattatgtggaaatgataatgagtgttt-tttatttccatgctcgggacgtcaccatctgtttcattacttgtctgcagATATTTTTTCTTCAGGGGAGGCTTATATTTGGACCCGATGTTAGATCTCTGGGGCTGACCATATTCCTTATTGTTGCTCCTGTTACGGTTTTCTGTGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatccatttatgactatgagggtgcttattcattgcttttatcattttcttgcagAAATTTTTTCTTCAAGGAAGGTTCATATTTGGACCAGATGTGAGATCACTGGCGCTGACAATTATTCTTATTGTTGCTCCTGTTGCAGTTTTCTGTGTCT
                                   cttttatcattttctt  CT-rich tract
                                    ttttatcattttctt  TA-rich tract