1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttttccctaattgcatgtttgctatgccctgtttctcgctgtgtttgtgttaatttactcctttaataagctctatattttgtttatgataactttttagGGTTTCAAGGGATGGAAAACATGCAGAGCTTCTGGCAATTGGGTGATGAACTCCGTGGGCACTCAAAAGCATCGGAGGATCACAAGTGGTTAATGGTTGC
species | Glycine max |
transcript | GLYMA19G25870.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTGCTTCTTCGAGTTTCACAGCCAAGTCGTAAAAG GGTTTCAAGGGATGGAAAACATGCAGAGCTTCTGGCAATTGGGTGATGAACEST: gi|192334781|gb|FK025272.1|FK025272
genomic: TTTGCTTCTTCGAGTTTCACAGCCAAGTCGTAAAAGgtactctctc ... aactttttagGGTTTCAAGGGATGGAAAACATGCAGAGCTTCTGGCAATTGGGTGATGAAC
EST: TATTTGCTTCTTCGAGTTTCACAGCCAAGTCGTAAAAG GGTTTCAAGGGATGGAAAACATGCAGAGCTTCTGGCAATTGGGTGATGAACEST: gi|24136953|gb|BU927463.1|BU927463
genomic: TATTTGCTTCTTCGAGTTTCACAGCCAAGTCGTAAAAGgtactctctc ... aactttttagGGTTTCAAGGGATGGAAAACATGCAGAGCTTCTGGCAATTGGGTGATGAAC
EST: TTTGCTTCTTCGAGTTTCACAGCCAAGTCGTAAAAG GGTTTCAAGGGATGGAAAACATGCAGAGCTTCTGGCAATTGGGTGATGAAC
genomic: TTTGCTTCTTCGAGTTTCACAGCCAAGTCGTAAAAGgtactctctc ... aactttttagGGTTTCAAGGGATGGAAAACATGCAGAGCTTCTGGCAATTGGGTGATGAAC
tgtgttaatttactcctttaataagctctatattttgtttatgataactttttagGGTTTCAAGGGATGGAAAACATGCAGAGCTTCTGGCAATTGGGTGATGAACTCCGTGGGCACTCAAAAGCATCGGAGGATCACAAGTGGTTAATGGTTGC
tgataac putative branch site (score: 2)
cttttt CT-rich tract
tctatattttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttccctaattgcatgtttgctatgccctgtttctcgctgtgtttgtgttaatttactcctttaataagctctatattttgtttatgataactttttagGGTTTCAAGGGATGGAAAACATGCAGAGCTTCTGGCAATTGGGTGATGAACTCCGTGGGCACTCAAAAGCATCGGAGGATCACAAGTGGTTAATGGTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT