1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaaatccaggattatcgtgtgaatttcgaagaaactacatgaatgttggtgtattttgtacttgtatctttgatggggttttgtgatgttttacttgcagGTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGAGAGGGTGCTGGGAAACGAGACTGTTG
species | Glycine max |
transcript | GLYMA19G22520.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGATTCTCATAAACCTATACATTACGTCGCAGCAAGTCAAGATCTTCAG GTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGAGEST: gi|209723933|gb|BW651375.1|BW651375
genomic: ATGATTCTCATAAACCTATACATTACGTCGCAGCAAGTCAAGATCTTCAGgttcattctt ... ttacttgcagGTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGAG
EST: ATGATTCTCATAAACCTATACATTACGTCGCAGCAAGTCAAGATCTTCAG GTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGAGEST: gi|213605285|gb|DB966887.1|DB966887
genomic: ATGATTCTCATAAACCTATACATTACGTCGCAGCAAGTCAAGATCTTCAGgttcattctt ... ttacttgcagGTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGAG
EST: ATGATTCTCATAAACCTATACATTACGTCGCAGCAAGTCAAGATCTTCAG GTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGAGEST: gi|19348475|gb|BM893007.1|BM893007
genomic: ATGATTCTCATAAACCTATACATTACGTCGCAGCAAGTCAAGATCTTCAGgttcattctt ... ttacttgcagGTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGAG
EST: ATGATTCTCATAAACCTATACATTACGTCGCAGCAAGTCAAGATCTTCAG GTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGAGEST: gi|213588378|gb|DB967864.1|DB967864
genomic: ATGATTCTCATAAACCTATACATTACGTCGCAGCAAGTCAAGATCTTCAGgttcattctt ... ttacttgcagGTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGAG
EST: ATGATTCTCATAAACCTATACATTACGTCGCAGCAAGTCAAGATCTTCAG GTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGAGEST: gi|27426455|gb|CA937975.1|CA937975
genomic: ATGATTCTCATAAACCTATACATTACGTCGCAGCAAGTCAAGATCTTCAGgttcattctt ... ttacttgcagGTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGAG
EST: ATGATTCTCATAAACCTATACATTACGTCGCAGCAAGTCAAGATCTTCAG GTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGAEST: gi|26058132|gb|CA801046.1|CA801046
genomic: ATGATTCTCATAAACCTATACATTACGTCGCAGCAAGTCAAGATCTTCAGgttcattctt ... ttacttgcagGTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGA
EST: TCTCATAAACCTATACATTACGTCGCAGCAAGTCAAGATCTTCAG GTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGAG
genomic: TCTCATAAACCTATACATTACGTCGCAGCAAGTCAAGATCTTCAGgttcattctt ... ttacttgcagGTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGAG
ttggtgtattttgtacttgtatctttgatggggttttgtgatgttttacttgcagGTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGAGAGGGTGCTGGGAAACGAGACTGTTG
ctttgat putative branch site (score: 5)
ttttactt putative PPT
tattttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatccaggattatcgtgtgaatttcgaagaaactacatgaatgttggtgtattttgtacttgtatctttgatggggttttgtgatgttttacttgcagGTTGGCGATGTTGCATTCTCCGTTCCTAATTCCTTGGTGGTTACGCTGGAGAGGGTGCTGGGAAACGAGACTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - tcgtgtg
- - - - - - - - - - - - - -gaagaaac
- - - - - - - - - - - - - - - - - - -catgaat
- - - - - - - - - - - - - - - - - - - - - - gttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtt