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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtataaaatttgcgaaataatgataataagcgttttttttccgatgctctaaaccctagttgttgaaccctagaatattgtttttttatgttgcgagatttttattcttattcttgttttgattgcagAGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGTTCCGATCGTTACTAGGTTTATTGGCGCTTGCAGCCCGGAGCAGATTCGC

Basic information

species Glycine max
transcript GLYMA19G22450.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7795604|gb|AW781001.1|AW781001
EST:     CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCT                         AGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
genomic: CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCTgtatgtataa ... ttgattgcagAGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
EST: gi|298181353|gb|HO022792.1|HO022792
EST:     CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCT                         AGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
genomic: CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCTgtatgtataa ... ttgattgcagAGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
EST: gi|209728140|gb|BW655375.1|BW655375
EST:     CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCT                         AGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
genomic: CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCTgtatgtataa ... ttgattgcagAGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
EST: gi|13311997|gb|BG405648.1|BG405648
EST:     CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCT                         AGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
genomic: CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCTgtatgtataa ... ttgattgcagAGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
EST: gi|193497112|gb|FK459968.1|FK459968
EST:     TTCACCCNGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCT                         AGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
genomic: T-CACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCTgtatgtataa ... ttgattgcagAGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
EST: gi|209713987|gb|BW684216.1|BW684216
EST:     CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCT                         AGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
genomic: CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCTgtatgtataa ... ttgattgcagAGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
EST: gi|12772043|gb|BG236970.1|BG236970
EST:     CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCT                         AGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
genomic: CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCTgtatgtataa ... ttgattgcagAGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
EST: gi|213598243|gb|DB970155.1|DB970155
EST:     CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCT                         AGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
genomic: CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCTgtatgtataa ... ttgattgcagAGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
EST: gi|298193935|gb|HO040583.1|HO040583
EST:     CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCT                         AGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
genomic: CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCTgtatgtataa ... ttgattgcagAGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
EST: gi|213605332|gb|DB966906.1|DB966906
EST:     CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCT                         AGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
genomic: CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCTgtatgtataa ... ttgattgcagAGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
EST: gi|4306254|gb|AI443878.1|AI443878
EST:     CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCT                         AGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
genomic: CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCTgtatgtataa ... ttgattgcagAGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
EST: gi|23732920|gb|BU764640.1|BU764640
EST:     CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCT                         AGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT
genomic: CTCACCCAGCTCGACCCCTCCATTCATTCCCTCGGGTTTCTCTACATCCTgtatgtataa ... ttgattgcagAGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattgtttttttatgttgcgagatttttattcttattcttgttttgattgcagAGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGTTCCGATCGTTACTAGGTTTATTGGCGCTTGCAGCCCGGAGCAGATTCGC
                                           ttttgat  putative branch site (score: 4)
                         tttttattcttattct  CT-rich tract
                        atttttattcttattc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtataaaatttgcgaaataatgataataagcgttttttttccgatgctctaaaccctagttgttgaaccctagaatattgtttttttatgttgcgagatttttattcttattcttgttttgattgcagAGAAGCTTCAATGACCGATCCGGTAACCAAAACGCAGGCTGAGACCGTCGTTCCGATCGTTACTAGGTTTATTGGCGCTTGCAGCCCGGAGCAGATTCGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT